Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1058
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    33   0.13 
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    29   2.8  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   3.7  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   3.7  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   4.9  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    28   6.5  
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    28   6.5  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   8.5  
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi...    27   8.5  

>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +2

Query: 134 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNVSSELARTRGIRLSN*NKAL 313
           T+ T SG       R++L+      R+  D HD +  PFN SS    T  + ++N N A 
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHTHITTDLNINNSN-AY 236

Query: 314 RWPSRVL 334
             P  +L
Sbjct: 237 EIPKNIL 243


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 429 GSQMPRHLISDAHEWINEIPTVPIYYLRNHSQGNGLGRISGER 557
           G  +P + +SD +  INE+   P    +   + NGL +  G+R
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKR 112


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 417 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 307
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 417 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 307
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 158 RVRIQSET*DDFRECHIKYIQFLRPH 81
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 614 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 510
           A+ + SP+N+ L   S  SS  +D   P PL +VS
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVS 139


>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 86  ASKTVYI*YDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPF 250
           ASK + I Y  RENR+ ++ G+     GL R +  V+ C +  + D      P F
Sbjct: 154 ASKGINIRYQIRENRVGYKAGA--LKEGLKRSY--VKHCEYVVIFDADFQPEPDF 204


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 626 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 519
           SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
           to receptor kinase GI:498278 from [Petunia
           integrifolia]; contains protein kinase domain,
           Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 652

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = -1

Query: 581 LESSSTGSSFPADSPKPVPLAVVSQIVDRDSGNLVNPFMRVTN*MTRHLATLRES*LLPP 402
           L  ++    FP        L  V    +R SG + +  +R++   T ++     S  +PP
Sbjct: 116 LNDNNFSGEFPESLTSLHRLKTVVLSRNRFSGKIPSSLLRLSRLYTFYVQDNLFSGSIPP 175

Query: 401 FTRACLNFFTLTFRALGRNHIASTPA 324
             +A L FF ++   L   HI  T A
Sbjct: 176 LNQATLRFFNVSNNQLS-GHIPPTQA 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,833,298
Number of Sequences: 28952
Number of extensions: 307155
Number of successful extensions: 864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)