Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1056
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    29   0.87 
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   4.6  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   8.1  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = -2

Query: 614 STAYRSFSIKEFLARGARKVTTGITGLWQPSVHSDVLFDPSMSALPIIAKQNSPSVGLFT 435
           +TA  +  +    A GAR   T IT   Q S  S V  +P+ S      + N+P+    +
Sbjct: 132 TTAQSTLQVPSSAASGARTQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPAS 191

Query: 434 HQKGT*AGFRPS*DRL 387
            +  T + F     RL
Sbjct: 192 SEPRTFSSFEDQYGRL 207


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 632 THRDCESTAYRSFSIKEFLARGARKVTTGITGLWQPSVHSDVLFDPSMSALPI 474
           T+  C+S  +      E      R++   +  LW+  +HS V+FD S    P+
Sbjct: 457 TNEICDSLYWNPSPSFESQVNSVRRIYARLE-LWKSDLHSSVVFDESAVQHPL 508


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 625 LCVLNIWIKPAFAFCSTR 678
           LCV ++WIK A AF   R
Sbjct: 414 LCVTDVWIKKATAFSKRR 431


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 513 AMNAWLPQASYPCGNFSGTSC*KLFNTKGSIGRAFAVPMRTEH 641
           +MN    Q  Y    F G +  +L    GSI   FAVP++ EH
Sbjct: 383 SMNNVFLQFIYEREKFHGIA--ELLEILGSIINGFAVPLKEEH 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,978
Number of Sequences: 5004
Number of extensions: 57046
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)