Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1055
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24977| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_31855| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_31075| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)             30   1.5  
SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)                 28   6.2  
SB_14394| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.81)            28   6.2  

>SB_24977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/54 (50%), Positives = 30/54 (55%)
 Frame = +3

Query: 252 SKKIKANPPLLYSILNPETNSLSPSAKSKGVRFVSANKEEKKHRNKGIIIDINQ 413
           ++K KA     YS L PETNS SPS KSKG   VSA  E K     G   +INQ
Sbjct: 54  ARKNKAKDIEAYSTLYPETNSDSPSVKSKGALLVSAKAEAKNIIAAGNKGNINQ 107


>SB_31855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/54 (50%), Positives = 30/54 (55%)
 Frame = +3

Query: 252 SKKIKANPPLLYSILNPETNSLSPSAKSKGVRFVSANKEEKKHRNKGIIIDINQ 413
           ++K KA     YS L PETNS SPS KSKG   VSA  E K     G   +INQ
Sbjct: 54  ARKNKAKDIEAYSTLYPETNSDSPSVKSKGALLVSAKAEAKNIIAAGNKGNINQ 107


>SB_31075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/54 (50%), Positives = 30/54 (55%)
 Frame = +3

Query: 252 SKKIKANPPLLYSILNPETNSLSPSAKSKGVRFVSANKEEKKHRNKGIIIDINQ 413
           ++K KA     YS L PETNS SPS KSKG   VSA  E K     G   +INQ
Sbjct: 54  ARKNKAKDIEAYSTLYPETNSDSPSVKSKGALLVSAKAEAKNIIAAGNKGNINQ 107


>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
          Length = 818

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 297 NPETNSLSPSAKSKGVRFVSANKEEKKHRNKGIIIDINQ 413
           N E  S +   +SK     S NKEEK+ + KG + D  Q
Sbjct: 461 NKEEKSKNKEEESKNKEEESKNKEEKRAKKKGKVADAGQ 499


>SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)
          Length = 465

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 8/41 (19%), Positives = 24/41 (58%)
 Frame = -3

Query: 275 GICFNFFAEYSSILFIRMILVIINMGGYNLRFFFYLKLRLI 153
           G  +  +  +++ + +   ++++NM GYN++  +  K+ +I
Sbjct: 302 GFTYTIYDRFTNYVMVIETILVLNMTGYNVKVVYITKIFII 342


>SB_14394| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.81)
          Length = 282

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 8/41 (19%), Positives = 24/41 (58%)
 Frame = -3

Query: 275 GICFNFFAEYSSILFIRMILVIINMGGYNLRFFFYLKLRLI 153
           G  +  +  +++ + +   ++++NM GYN++  +  K+ +I
Sbjct: 106 GFTYTIYDRFTNYVMVIETILVLNMTGYNVKVVYITKIFII 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,725,347
Number of Sequences: 59808
Number of extensions: 110075
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)