Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1055
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm rece...    27   7.2  
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = -3

Query: 269 CFNFFAEYSSILFIRMILVIINMGGYNLRFFFYLKLRL 156
           C +FF  YSS LF+   L+I+ +G     FFF LK+RL
Sbjct: 401 CVSFF--YSSFLFLPSQLLILTIGCVASTFFF-LKVRL 435


>AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 69 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 406 ISIIIPLFLCFFSSLLAETNRTPFDFAEGERELVSGFNIEYRRGGFALI 260
           I +IIP    FF+ LL+   +   D+  G    + GFN  +    F LI
Sbjct: 256 IFLIIPTIPIFFAPLLSPILKIDVDWQTGNLFALVGFNAPFDSIAFMLI 304


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 260 FFAEYSSILFIRMILVIINMGGYNLRFFFYLKLRLISF 147
           FF +   +L +  + V+ +  G N+R+FF    +LI F
Sbjct: 281 FFFDIFYVLILFKLFVLKHCRGRNMRYFFKFSQKLIFF 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,975,373
Number of Sequences: 27780
Number of extensions: 98675
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)