Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1053
         (966 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    31   1.4  
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111     31   1.8  
06_01_0350 + 2534422-2535615                                           31   1.8  

>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -1

Query: 228 PSPEFSRSA-ESIRTPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAAS 70
           P P+ SRS  ES R  P          S   +  +   GFHG   L+   KL PDL +  
Sbjct: 168 PPPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWL 226

Query: 69  SGHFGLPRRTLVFKDEGTI 13
             HF      LVF   G I
Sbjct: 227 MEHFNPATNQLVFPGRGAI 245


>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
          Length = 553

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -1

Query: 285 HLGDLLRIWVQPXRHLXVXPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRT-LR 109
           HL +++   +   RH  V  SP   R+  + RT P  R + R     PSI    +RT  +
Sbjct: 240 HLANVVNQGLTQTRHTSVRVSPSVGRTVSATRTTPATR-AGRGMSNAPSIQIPQSRTRFK 298

Query: 108 QKRKLFPDLSAASSGHFG 55
           +     P +   +   FG
Sbjct: 299 RVGATSPGIVTLNDNQFG 316


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 130 PWNSNAQAEKKTLPGPLGGVFRP 62
           PW S+A+ E+K LP PL  +F P
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLP 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,749,497
Number of Sequences: 37544
Number of extensions: 240419
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)