Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1053
         (966 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF179181-1|ABN05284.1|  727|Homo sapiens LIM domain binding 3 pr...    31   8.3  
AF276807-1|AAQ14316.1|  330|Homo sapiens Z-band alternatively sp...    31   8.3  
AB014513-1|BAA31588.1|  734|Homo sapiens KIAA0613 protein protein.     31   8.3  

>EF179181-1|ABN05284.1|  727|Homo sapiens LIM domain binding 3
           protein.
          Length = 727

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = -1

Query: 252 PXRHLXVXPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAA 73
           P   L    SPE    A  +  P  +  SS+   Y   IG +   TLR+  +++      
Sbjct: 164 PRASLRAKTSPE---GARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG 220

Query: 72  SSGHFGLPRRTLVFKD 25
            +   GLP  +L  KD
Sbjct: 221 KASGVGLPGGSLPIKD 236


>AF276807-1|AAQ14316.1|  330|Homo sapiens Z-band alternatively
           spliced PDZ-motif protein ZASP-4 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = -1

Query: 252 PXRHLXVXPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAA 73
           P   L    SPE    A  +  P  +  SS+   Y   IG +   TLR+  +++      
Sbjct: 164 PRASLRAKTSPE---GARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG 220

Query: 72  SSGHFGLPRRTLVFKD 25
            +   GLP  +L  KD
Sbjct: 221 KASGVGLPGGSLPIKD 236


>AB014513-1|BAA31588.1|  734|Homo sapiens KIAA0613 protein protein.
          Length = 734

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = -1

Query: 252 PXRHLXVXPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAA 73
           P   L    SPE    A  +  P  +  SS+   Y   IG +   TLR+  +++      
Sbjct: 171 PRASLRAKTSPE---GARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG 227

Query: 72  SSGHFGLPRRTLVFKD 25
            +   GLP  +L  KD
Sbjct: 228 KASGVGLPGGSLPIKD 243


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,308,108
Number of Sequences: 237096
Number of extensions: 1267864
Number of successful extensions: 2768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2768
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12825217482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)