Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1052
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 31 1.0
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 2.4
AM085500-1|CAJ30198.1| 947|Caenorhabditis elegans autophagy pro... 29 3.1
AF101315-4|AAO25988.1| 719|Caenorhabditis elegans Hypothetical ... 29 3.1
AF101315-3|AAC69227.1| 880|Caenorhabditis elegans Hypothetical ... 29 3.1
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 4.1
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 4.1
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 4.1
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 4.1
L23645-7|AAK26132.2| 157|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 9.6
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 9.6
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -2
Query: 425 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGDL-LRIW 255
+D + P P P Q H P +R NP P+ + P+ L L A H+GD +R+
Sbjct: 53 VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGDAPIRMA 110
Query: 254 Y--EPARH 237
Y +P +H
Sbjct: 111 YTGQPTQH 118
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 440 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 327
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>AM085500-1|CAJ30198.1| 947|Caenorhabditis elegans autophagy
protein 9 protein.
Length = 947
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 485 LYIFNMTLRKSSYVSDWIRTRVLRPSADLP 574
+YI++ LR +Y++ I R+L P D+P
Sbjct: 294 IYIYHRILRYKNYMTGMINKRILHPVFDVP 323
>AF101315-4|AAO25988.1| 719|Caenorhabditis elegans Hypothetical
protein T22H9.2b protein.
Length = 719
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 485 LYIFNMTLRKSSYVSDWIRTRVLRPSADLP 574
+YI++ LR +Y++ I R+L P D+P
Sbjct: 294 IYIYHRILRYKNYMTGMINKRILHPVFDVP 323
>AF101315-3|AAC69227.1| 880|Caenorhabditis elegans Hypothetical
protein T22H9.2a protein.
Length = 880
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 485 LYIFNMTLRKSSYVSDWIRTRVLRPSADLP 574
+YI++ LR +Y++ I R+L P D+P
Sbjct: 294 IYIYHRILRYKNYMTGMINKRILHPVFDVP 323
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 457 LTR*NEHNARTSTRPGTGRIRFPSKPDT 374
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 457 LTR*NEHNARTSTRPGTGRIRFPSKPDT 374
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 457 LTR*NEHNARTSTRPGTGRIRFPSKPDT 374
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 457 LTR*NEHNARTSTRPGTGRIRFPSKPDT 374
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>L23645-7|AAK26132.2| 157|Caenorhabditis elegans Hypothetical
protein F54F2.7 protein.
Length = 157
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = +1
Query: 142 RYGSEREEHRICGGVRILSADLENSGEGCTWRCRAGSYHI 261
++G++R +++ G + + L+ + CT++C+ GS H+
Sbjct: 57 KHGADRSTNQVSGKGKKGALILQPDSKLCTFKCKDGSEHV 96
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 207 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 79
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
C46C2.1b protein.
Length = 1677
Score = 27.5 bits (58), Expect = 9.6
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = -3
Query: 601 ETKPTRLTARKIRGRPENAGPDPVRNVRRFS-ECHIKYIQFL-RPHYIKILTR*NEHNAR 428
+T PTR +++ P N V NVR+ S E + + +Q + RP I +++ N+ +
Sbjct: 1066 KTPPTRDASQE----PNNV---QVTNVRKVSQESNAESVQSIPRPGGIIVMSPTNQTD-- 1116
Query: 427 TSTRPGTGRIRFPSKPDTPRSSEPILIP 344
S P TG PS+ +S++PI P
Sbjct: 1117 -SAPPPTGAAAKPSRFQVTKSADPIATP 1143
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
C46C2.1a protein.
Length = 1838
Score = 27.5 bits (58), Expect = 9.6
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = -3
Query: 601 ETKPTRLTARKIRGRPENAGPDPVRNVRRFS-ECHIKYIQFL-RPHYIKILTR*NEHNAR 428
+T PTR +++ P N V NVR+ S E + + +Q + RP I +++ N+ +
Sbjct: 1066 KTPPTRDASQE----PNNV---QVTNVRKVSQESNAESVQSIPRPGGIIVMSPTNQTD-- 1116
Query: 427 TSTRPGTGRIRFPSKPDTPRSSEPILIP 344
S P TG PS+ +S++PI P
Sbjct: 1117 -SAPPPTGAAAKPSRFQVTKSADPIATP 1143
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 191 IRTPPQMRCSSRSEPYLPSIGFHGT 117
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,529,130
Number of Sequences: 27780
Number of extensions: 363925
Number of successful extensions: 1141
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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