Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1050
(611 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea... 45 0.001
UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico... 45 0.001
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea... 43 0.005
UniRef50_Q4SRF1 Cluster: Chromosome undetermined SCAF14527, whol... 42 0.012
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=... 38 0.14
UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos t... 38 0.19
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr... 38 0.25
UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropelli... 35 1.3
UniRef50_Q6L4B8 Cluster: Polyprotein, putative; n=1; Solanum dem... 34 2.3
UniRef50_A7CP54 Cluster: CsbD family protein; n=1; Opitutaceae b... 34 3.1
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2... 33 7.1
UniRef50_Q8YJY3 Cluster: All8547 protein; n=1; Nostoc sp. PCC 71... 33 7.1
UniRef50_A0BZS2 Cluster: Chromosome undetermined scaffold_14, wh... 33 7.1
UniRef50_UPI0000F1FDAD Cluster: PREDICTED: similar to reverse tr... 32 9.3
UniRef50_A5KBE9 Cluster: Putative uncharacterized protein; n=1; ... 32 9.3
UniRef50_Q4PEL2 Cluster: Putative uncharacterized protein; n=1; ... 32 9.3
>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 958
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = -3
Query: 438 YGHVMRRNENKVGKRVLTMNVVGYRGRGRLKKKWMDCVKDDMCKRGVSEEIVYDTGVWKE 259
+GH+ R N + +L N+ G R RGR K+W DC+K D CK + + T + ++
Sbjct: 863 FGHINRMNSKRYPHILLNGNIHGKRPRGRPAKRWTDCIKAD-CKNRQVDSLTKATRLTED 921
Query: 258 KNV 250
+ V
Sbjct: 922 RKV 924
>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
eudicotyledons|Rep: Polyprotein, putative - Solanum
demissum (Wild potato)
Length = 868
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -3
Query: 438 YGHVMRRNENKVGKRVLTMNVVGYR-GRGRLKKKWMDCVKDDMCKRGVSEEIVYDTGVWK 262
+GHV RR+ + +R M V G R GRGR KK W + ++ D+ ++E++ D W+
Sbjct: 625 FGHVKRRSADAPVRRCEVMVVEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEWR 684
Query: 261 EK 256
+
Sbjct: 685 SR 686
>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=5;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 1030
Score = 43.2 bits (97), Expect = 0.005
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -3
Query: 447 IYLYGHVMRRNENKVGKRVLTMNVVGYRGRGRLKKKWMDCVKDDMCK 307
I +GHV+R + K + V G R RGR K+W+DC+ +D CK
Sbjct: 947 IKYFGHVLRMKPTRYPKIAVEGKVTGNRPRGRPPKRWLDCISED-CK 992
>UniRef50_Q4SRF1 Cluster: Chromosome undetermined SCAF14527, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14527,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 52
Score = 41.9 bits (94), Expect = 0.012
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = -3
Query: 426 MRRNE-NKVGKRVLTMNVVGYRGRGRLKKKWMDCVKDDMCKRGVSEE 289
M R E K G+R+L + + G R RGR K+++MD VK+DM G EE
Sbjct: 1 MSRGEMEKDGRRMLRLELPGRRPRGRTKRRFMDVVKEDMKVVGAREE 47
>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
Papilionoideae|Rep: Reverse transcriptase family member
- Glycine max (Soybean)
Length = 377
Score = 38.3 bits (85), Expect = 0.14
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -3
Query: 438 YGHVMRRNENKVGKRVLTMNV-VGYRGRGRLKKKWMDCVKDDMCKRGVSEEIVYDTGVWK 262
+GHV RR + V +RV M RGRGR KK + +K D+ G+ +V D +W+
Sbjct: 309 FGHVERRPVDSVLRRVDQMERRQTIRGRGRPKKTIREVIKKDLEINGLDRSMVLDRTLWR 368
Query: 261 E 259
+
Sbjct: 369 K 369
>UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos
taurus|Rep: Reverse transcriptase-like - Bos taurus
(Bovine)
Length = 335
Score = 37.9 bits (84), Expect = 0.19
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = -3
Query: 465 IRIHLWIYLYGHVMRRNENKVGKRVLTMNVVGYRGRGRLKKKWMDCVKDDM-CKRGVSEE 289
+ + L + +GH+MRR ++ + K ++ + G R RGR + +W+D + + M G E
Sbjct: 253 LMLKLKLQYFGHLMRRADS-LEKTLMLGKIEGRRRRGRQRMRWLDGIINSMDMGLGGLRE 311
Query: 288 IVYDTGVW 265
+V D W
Sbjct: 312 LVMDRETW 319
>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
transcriptase-like; n=6; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to reverse
transcriptase-like - Strongylocentrotus purpuratus
Length = 415
Score = 37.5 bits (83), Expect = 0.25
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = -3
Query: 438 YGHVMRRNENKVGKRVLTMNVVGYRGRGRLKKKWMDCVKD 319
+GH++R + + + +++ V G R RGR +K+W D +K+
Sbjct: 335 FGHILRGSGSPLAAQIIESQVEGKRKRGRQRKQWFDNIKE 374
>UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropellin
Ia; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to fibropellin Ia - Strongylocentrotus
purpuratus
Length = 1096
Score = 35.1 bits (77), Expect = 1.3
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -3
Query: 423 RRNENK-VGKRVLTMNVVGYRGRGRLKKKWMDCVKDDMCKRGV-----SEEIVYDTGVWK 262
++NE+K + +L NV G RGR K+W DC+K D R V + + D VW+
Sbjct: 6 QQNESKKIPHILLNENVHGKHPRGRPAKRWTDCIKADCNNRQVDSLTKATRLTEDRKVWR 65
>UniRef50_Q6L4B8 Cluster: Polyprotein, putative; n=1; Solanum
demissum|Rep: Polyprotein, putative - Solanum demissum
(Wild potato)
Length = 115
Score = 34.3 bits (75), Expect = 2.3
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 438 YGHVMRRNENKVGKRVLTMNVVG-YRGRGRLKKKW 337
+GHVMRR+ +R ++VVG RG GRLK W
Sbjct: 78 FGHVMRRSTEAPVRRCERLDVVGKRRGSGRLKNYW 112
>UniRef50_A7CP54 Cluster: CsbD family protein; n=1; Opitutaceae
bacterium TAV2|Rep: CsbD family protein - Opitutaceae
bacterium TAV2
Length = 92
Score = 33.9 bits (74), Expect = 3.1
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Frame = -3
Query: 432 HVMRR--NENKVGKRVLTMNVVGYRG-----RGRLKKKWMDCVKDDM-CKRGVSEEIV 283
HV R ++ K G LTMN + +G +G+LK+KW DD+ C G +E++
Sbjct: 10 HVCRHVGDKRKQGIEKLTMNTLEIKGDWNIIKGKLKQKWARLTDDDLQCAEGKQDELI 67
>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
F28E10.3 [imported] - Caenorhabditis elegans; n=4;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
protein F28E10.3 [imported] - Caenorhabditis elegans -
Strongylocentrotus purpuratus
Length = 824
Score = 32.7 bits (71), Expect = 7.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 435 GHVMRRNENKVGKRVLTMNVV-GYRGRGRLKKKWMD 331
GH+ RRN+N+ + G R RGR +K+W D
Sbjct: 366 GHISRRNDNRWSSAITHWTPYEGKRNRGRQRKRWRD 401
>UniRef50_Q8YJY3 Cluster: All8547 protein; n=1; Nostoc sp. PCC
7120|Rep: All8547 protein - Anabaena sp. (strain PCC
7120)
Length = 166
Score = 32.7 bits (71), Expect = 7.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 574 E*CSKIIINVPNVRYCNGFMPQISV-LQVSYLYICKNN 464
E C K +IN PN+ YC GF V + VS+ ++ N+
Sbjct: 61 ENCLKALINFPNLNYCEGFAISDDVSIAVSHAWLVNND 98
>UniRef50_A0BZS2 Cluster: Chromosome undetermined scaffold_14, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_14,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1732
Score = 32.7 bits (71), Expect = 7.1
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -3
Query: 588 VITSKSDVQRLLLMCLTSDTVMDLCLR-YQYFRFLTYIFARIIRIHLWIYLYGHVMRRNE 412
+IT S++ LL S+T MDLC+ Y+ F F R I I + + LYG +
Sbjct: 181 IITVISNIFFQLLKLNVSNTTMDLCITGYERLHFTKIDFLREIVILIQVILYGIIEDVGR 240
Query: 411 NKVGKRVLTMNV 376
++ + +L++ V
Sbjct: 241 AQIAQGLLSILV 252
>UniRef50_UPI0000F1FDAD Cluster: PREDICTED: similar to reverse
transcriptase-like; n=1; Danio rerio|Rep: PREDICTED:
similar to reverse transcriptase-like - Danio rerio
Length = 249
Score = 32.3 bits (70), Expect = 9.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 438 YGHVMRRNENKVGKRVLTMNVV-GYRGRGRLKKKWMDCVKDD 316
+GH+M+ N + T+ V G R RGR + +W+D +K D
Sbjct: 194 FGHIMQTNSMETA---FTLGAVSGSRRRGRQRTRWLDTIKTD 232
>UniRef50_A5KBE9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 1061
Score = 32.3 bits (70), Expect = 9.3
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Frame = +1
Query: 1 RTRERXRTEQPLREGAEIKTGL*NFKINNCAYSILFLISHNNQKQGYMYEYMYISCQIEY 180
R + T REG +F N Y +L L + +K ++ Y+Y
Sbjct: 908 RLGDEWSTSSERREGPTRGESSPSFYYTNDIYLLLLLYTQRIKKCLNVFSYIYSKNHFSR 967
Query: 181 YC*M---DTDSSFILLPL-SQSPWDRRNIFLLP---YSC--IIHYFFAHSPLTHIVLHAI 333
YC + +F+LL S S W FLL ++C ++F AHS + +L+ +
Sbjct: 968 YCSLCCIFRKLNFVLLSTRSSSHWVANAAFLLYHNWFACFSFFYFFCAHSYVAFFLLYQL 1027
Query: 334 HPF 342
F
Sbjct: 1028 STF 1030
>UniRef50_Q4PEL2 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 446
Score = 32.3 bits (70), Expect = 9.3
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 321 PSRNPSISS*VYLFLYILPHS*SILSYQPYFHFVSSHVHTDK 446
PSR SI+ Y F YILP++ S L +QP + S+ H DK
Sbjct: 184 PSRIRSITK--YAFNYILPNAVSPLPHQPIESYASTGNHMDK 223
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,795,174
Number of Sequences: 1657284
Number of extensions: 12027991
Number of successful extensions: 27792
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 26826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27774
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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