Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1050
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    32   0.075
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    28   0.93 
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   3.7  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    26   4.9  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    26   4.9  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   6.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.5  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    25   8.6  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.6  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 502 VLQVSYLYICKNNPY-PFMDLSVWTCDE---TK*K*GW*ESIDYEC 377
           + Q +Y Y C   P+ PF D+  WTC+    +  K  W + +DY C
Sbjct: 314 ICQSNYHYACVEAPFAPFSDIHYWTCNSCIPSSLKILW-KEVDYHC 358


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 98  LFYF*SHITIKNKVICTSICISHVKLNIIVKWIRI 202
           LF+     ++KN   C  +  SH K+N + +W+ +
Sbjct: 121 LFFVSYFFSLKNNPFCLMLFSSHEKMNYLHRWLSV 155


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 540 TSDTVMDLCLRYQYFRFLTYIFARIIRIHLWIYLYG 433
           T    + +C+    F FLT+I  R+ R   WIY  G
Sbjct: 68  TKGFFIPMCVITGVFYFLTFIMIRLARQWGWIYPTG 103


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 20/84 (23%), Positives = 32/84 (38%)
 Frame = +2

Query: 134 KVICTSICISHVKLNIIVKWIRIXXXXXXXXXXXXGIGVTFFSFHTPVSYTISSLTPLLH 313
           +V C    IS V L + +  I +             +    F F T +  +I++L   L 
Sbjct: 216 QVFCVLASISLV-LTVTITTIFVSERRFPPVEHEKSVAGEIFEFFTTMRQSITALPFTLK 274

Query: 314 ISSFTQSIHFFLSLPLPLYPTTFI 385
              F Q   +F   P   Y TT++
Sbjct: 275 RICFVQFFAYFGWFPFLFYITTYV 298


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 406 LIFISSHHMSIQINP*MDTDYSCKYISKKPEVLISEA 516
           ++F+   HM+  I P  D++ SC  ISK    + S +
Sbjct: 158 ILFLFKDHMNTSIVPAHDSEISCLGISKTGSKIASSS 194


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 270 LLYHTLFLRSLPSYTYRPSRNPSISS 347
           ++ H  F+  LP+++  PSR  S SS
Sbjct: 268 IMQHPWFIADLPTHSRLPSRTSSFSS 293


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 489  LTYIFARIIRIHLWIYLYG 433
            ++YIF + IR+HL  YL G
Sbjct: 1335 ISYIFTKFIRMHLLGYLKG 1353


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 275 VSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTL 397
           + +       LL I SF QS +FFL      +P+T I+ TL
Sbjct: 315 IEFDTKGCLALLTIKSFYQSGNFFLDFLKEKFPST-ILETL 354


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 362 PLYPTTFIVNTLLPTL 409
           PL PTTF++N L+  L
Sbjct: 368 PLTPTTFVINNLIHAL 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,766
Number of Sequences: 5004
Number of extensions: 55284
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)