Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1050
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0074 - 40894916-40895754,40896322-40896691,40897239-408972...    29   2.2  
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864...    28   5.1  
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349...    28   6.7  
04_04_0398 + 24933894-24933916,24934015-24934555                       28   6.7  
07_03_1119 - 24118565-24118625,24119868-24119914,24120101-241201...    27   8.9  
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283...    27   8.9  
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887...    27   8.9  

>01_07_0074 -
           40894916-40895754,40896322-40896691,40897239-40897291,
           40897456-40897593,40897646-40897716,40898655-40898900,
           40899205-40899386,40899494-40899697
          Length = 700

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 332 SIHFFLSLPLPLYPTTFIVNTLLPTLFSFRLITCPYR*IHKWIRI 466
           S  F+ S+P PL+   F+V+TL   + S  LI+  Y  I + I +
Sbjct: 328 STAFYSSVPAPLFWPMFVVSTLAAIVASQSLISASYSIIRQSIAL 372


>12_02_1066 +
           25785749-25785868,25785953-25786141,25786250-25786414,
           25786649-25786999,25787924-25788001,25788137-25788277,
           25788415-25788459,25788597-25788763,25788833-25788911,
           25788985-25789067,25789219-25789348,25789432-25789564,
           25789955-25790103,25790339-25790534,25791086-25791288
          Length = 742

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 565 SKIIINVPNVRYCNGFMPQISVLQVSYLYICKNNPYPFMDLSVW 434
           S  ++ VP   YC  F       +VS + +C+ N +P  D++++
Sbjct: 322 SNKLVAVPTEDYCIQFYDLFENTEVSEVQVCERNFHPVDDITMY 365


>07_03_1304 -
           25629822-25629839,25630091-25631148,25631784-25634928,
           25635454-25636293
          Length = 1686

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/46 (21%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 94  YSILFLIS--HNNQKQGYMYEYMYISCQIEYYC*MDTDSSFILLPL 225
           Y ++ ++S  H N+++G +  ++    ++E+ C   +D+  ++LP+
Sbjct: 474 YDVVKMVSIIHKNEEEGAILAFLTSQLEVEWACENFSDADAVVLPM 519


>04_04_0398 + 24933894-24933916,24934015-24934555
          Length = 187

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 348 KKKWMDCVKDDMCKRGVSEEI-VYDTGVWKE 259
           KKK+  CV+D+   + ++E++ V  T +W+E
Sbjct: 20  KKKFRFCVRDEYGTKALAEQVMVKSTSLWRE 50


>07_03_1119 -
           24118565-24118625,24119868-24119914,24120101-24120160,
           24120715-24120822,24121628-24121831
          Length = 159

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 91  AYSILFLISHNNQKQGYMY 147
           ++++L LI HNNQK  Y Y
Sbjct: 140 SFTLLLLIRHNNQKTKYWY 158


>06_01_0394 -
           2835438-2835896,2836664-2836913,2837197-2837669,
           2838941-2840608
          Length = 949

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 196 TDSSFILL-PLSQSPWDRRNIFLLPYS 273
           T+S  +++ P S   WDR  IFL P+S
Sbjct: 582 TESGLVMVVPFSADTWDRSWIFLRPFS 608


>05_05_0114 -
           22488172-22488279,22488414-22488511,22488616-22488784,
           22489310-22489377,22490485-22490521,22490660-22490741,
           22490845-22490903
          Length = 206

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 501 YFRFLTYIFARIIRIHLWIYLYGHVMRRNENKVGK 397
           Y  FL  + A  +   LW+ LY HV ++  +K+GK
Sbjct: 166 YHSFLVAVLA--VYPFLWMKLYLHVFKQRRSKLGK 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,822,114
Number of Sequences: 37544
Number of extensions: 306047
Number of successful extensions: 677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)