Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1050
(611 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 42 5e-04
SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 38 0.006
SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012) 38 0.006
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35) 36 0.020
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38) 33 0.14
SB_48328| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011) 33 0.24
SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012) 33 0.24
SB_44669| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-26) 32 0.32
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.0
SB_17732| Best HMM Match : RVT_1 (HMM E-Value=1.5e-27) 29 3.0
SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7) 29 3.9
SB_16600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 28 5.2
SB_21281| Best HMM Match : CRA_rpt (HMM E-Value=5.7) 28 6.9
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 27 9.1
>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 869
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = -3
Query: 486 TYIFARIIRIHL-WIYLYGHVMRRNENKVGKRVLTMNVV-GYRGRGRLKKKWMDCVKDDM 313
T I A+I++ L W YGHV+R E+++ ++VL + GYR +GR KK++ D +K ++
Sbjct: 770 TSIEAKILQAQLRW---YGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 826
>SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 629
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = -3
Query: 486 TYIFARIIRIHL-WIYLYGHVMRRNENKVGKRVLTMNVV-GYRGRGRLKKKWMDCVKDDM 313
T I A+I++ L W GHV+R E+++ ++VL + GYR +GR KK++ D +K ++
Sbjct: 491 TSIEAKILQAQLRWS---GHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 547
>SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
Length = 159
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = -3
Query: 486 TYIFARIIRIHL-WIYLYGHVMRRNENKVGKRVLTMNVV-GYRGRGRLKKKWMDCVKDDM 313
T I A+I++ L W GHV+R E+++ ++VL + GYR +GR KK++ D +K ++
Sbjct: 21 TSIEAKILQAQLRWS---GHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 77
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = -3
Query: 486 TYIFARIIRIHL-WIYLYGHVMRRNENKVGKRVLTMNVV-GYRGRGRLKKKWMDCVKDDM 313
T I A+I++ L W GHV+R E+++ ++VL + GYR +GR KK++ D +K ++
Sbjct: 3261 TSIEAKILQAQLRWS---GHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 3317
>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
Length = 963
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = -3
Query: 486 TYIFARIIRIHL-WIYLYGHVMRRNENKVGKRVLTMNVV-GYRGRGRLKKKWMDCVKDDM 313
T I A+I++ L W GHV+R E+++ ++V + GYR +GR KK++ D +K ++
Sbjct: 825 TSIEAKILQAQLRWS---GHVIRMEESRIPRQVFYSELASGYRKKGRPKKRYKDNLKSNL 881
>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = -3
Query: 486 TYIFARIIRIHL-WIYLYGHVMRRNENKVGKRVLTMNVV-GYRGRGRLKKKWMDCVKDDM 313
T I A+I++ L W GHV+R E+++ ++V + GYR +GR KK++ D +K ++
Sbjct: 496 TSIEAKILQAQLRWS---GHVIRMEESRIPRQVFYSELASGYRKKGRPKKRYKDNLKSNL 552
>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = -3
Query: 486 TYIFARIIRIHL-WIYLYGHVMRRNENKVGKRVLTMNVV-GYRGRGRLKKKWMDCVKDDM 313
T I A+I++ L W GHV+R E+++ ++V + GYR +GR KK++ D +K ++
Sbjct: 663 TSIEAKILQAQLRWS---GHVIRMEESRIPRQVFYRELASGYRKKGRPKKRYKDNLKSNL 719
>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
Length = 492
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -3
Query: 450 WIYLYGHVMRRNENKVGKRVLTMNVVGYRGRGRLKKKW---MDCVKDDMCKR-GVSEEIV 283
W ++ GH +R+ + ++ LT N G R RGR + W +D M K G E +
Sbjct: 412 WRWI-GHTLRKPATNITRQSLTWNPQGKRKRGRPRNTWRRDLDADAKQMGKTWGQLERLA 470
Query: 282 YDTGVWKE 259
+ W+E
Sbjct: 471 QNRDAWRE 478
>SB_48328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 513
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +2
Query: 251 TFFSFHTPVSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPTLFSFRLIT 430
+F +F++ V T+ ++T + I ++ ++ F++L P P +VNT + LFS LIT
Sbjct: 224 SFQAFNSNV--TLINITIMFSIEAYDGTVRRFVTLARPQGPAAAVVNTNVGILFSASLIT 281
>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
Length = 634
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -3
Query: 438 YGHVMRRNENKVGKRVLTMNVVGYRGRGRLKKKWMDCVKDDMCKRGVSEEIVYDTGVWKE 259
YGHV R + + + G R RGR +K W + +++D+ G++ D WK
Sbjct: 563 YGHVQR--STSWIRWIRDFIIEGKRTRGRPRKNWHEVLREDLKLAGLTPHDTQDRVRWKL 620
Query: 258 K 256
K
Sbjct: 621 K 621
>SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
Length = 401
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = -3
Query: 486 TYIFARIIRIHL-WIYLYGHVMRRNENKVGKRVLTMNVV-GYRGRGRLKKKWMDCVK 322
T I A+I++ L W GHV+R E+++ ++V ++ GYR +G KK++ D +K
Sbjct: 267 TSIEAKILQAQLRWS---GHVIRMEESRIPRQVFYSDLASGYRKKGPPKKRYKDNLK 320
>SB_44669| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-26)
Length = 308
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = -2
Query: 604 MDLISSNYIKE*CSKIIINVPNVRYCNGFMPQISVLQVSYLYI----CKNNPYPFMDLSV 437
+ + +N + C+ ++IN+ C GF+ + V+ + YL I K YPF+++S+
Sbjct: 40 LTIAKTNSLHNFCNFLLINLAISDMCLGFLELLKVVLLRYLNIYLGALKVASYPFIEVSI 99
Query: 436 WT 431
+T
Sbjct: 100 FT 101
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 510 RYQYFRFLTYIFARIIRIHLWIYLYGHVMRRNE 412
R RFL I AR +RIH W + GH+ R E
Sbjct: 1291 RVNVHRFLPSIKARYVRIHPWTW-QGHIAMRVE 1322
>SB_17732| Best HMM Match : RVT_1 (HMM E-Value=1.5e-27)
Length = 399
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 138 LYVRVYVYLMSN*ILLLNGYGFIIHSPTPL 227
+Y R+Y +L+ N IL N YGF H T L
Sbjct: 74 VYKRLYNFLLKNNILFDNQYGFRKHHSTAL 103
>SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)
Length = 479
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 68 ETSKLITVLTLFYF*SHITIKNKVICTSICISHVKLNIIV-KWIRI 202
E + + VLTLF F ++ K S+C +HV + +IV W+ +
Sbjct: 107 ELLERLVVLTLFCFVERVS---KAAALSVCFAHVWITVIVISWLSV 149
>SB_16600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 202 NPYPFNNNIQFDMRYTYTRTYNLVFDCYVRLEIK*SKHSY 83
NPYPF +N F RY + + L + +VR H+Y
Sbjct: 5 NPYPFTSNAVFYPRYIFGKHEQLCREGFVRTTRVIDCHNY 44
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 332 SIHFFLSLPLPLYP-TTFIVNTLLPTLFSF 418
S+ F+++PLP YP F+VN LP + F
Sbjct: 576 SVVEFVAIPLPAYPRVVFLVNLALPGIERF 605
>SB_21281| Best HMM Match : CRA_rpt (HMM E-Value=5.7)
Length = 403
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 269 TPVSYTISSLTPLLHISSFTQ-SIHFFLSLPLPLYPTTFIVNTLLPTLFSFR 421
TPV T S +TPLL TQ IH FLS + P + ++ P L + R
Sbjct: 142 TPVESTASDITPLL-----TQLEIHSFLSFTSTVPPGEYFTSSAPPCLATAR 188
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 450 WIYLYGHVMRRNENKVGKRVLTMNVVGYRGRGRLKKKW 337
W ++ GH + + + ++ LT N G R RGR + W
Sbjct: 167 WRWI-GHTLPKPATNITRQSLTWNPKGKRKRGRPRNTW 203
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 450 WIYLYGHVMRRNENKVGKRVLTMNVVGYRGRGRLKKKW 337
W ++ GH + + + ++ LT N G R RGR + W
Sbjct: 527 WRWI-GHTLPKPATNITRQSLTWNPKGKRKRGRPRNTW 563
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,871,831
Number of Sequences: 59808
Number of extensions: 380327
Number of successful extensions: 1213
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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