Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1050
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-6|AAM34394.2|  165|Caenorhabditis elegans Vig (drosophi...    29   2.6  
Z47809-8|CAH10845.1|  968|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z36719-11|CAH04695.1|  968|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.       29   3.5  
Z82076-5|CAB04935.2|  307|Caenorhabditis elegans Hypothetical pr...    27   8.0  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    27   8.0  

>AF016672-6|AAM34394.2|  165|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform b
           protein.
          Length = 165

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 287 ISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPTLFSFRLI 427
           I  L   LH+  F + + F +SLP+P+YPT       L  +F F L+
Sbjct: 85  IQMLCSSLHLVFF-KILLFSISLPVPIYPTNCSFPKCLFLIFLFFLV 130


>Z47809-8|CAH10845.1|  968|Caenorhabditis elegans Hypothetical
           protein C06C3.1d protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 245 GVTFFSFHTPVSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPT 406
           GV   S  +  S T SS TP+  I S   SIH  LS P  +  TT    T+ PT
Sbjct: 563 GVPLSSRSSTSSVTRSSSTPVSEIISPPSSIHSQLSFP-SVSNTTTTTATVAPT 615


>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 245 GVTFFSFHTPVSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPT 406
           GV   S  +  S T SS TP+  I S   SIH  LS P  +  TT    T+ PT
Sbjct: 563 GVPLSSRSSTSSVTRSSSTPVSEIISPPSSIHSQLSFP-SVSNTTTTTATVAPT 615


>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
           protein C06C3.1b protein.
          Length = 1019

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 245 GVTFFSFHTPVSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPT 406
           GV   S  +  S T SS TP+  I S   SIH  LS P  +  TT    T+ PT
Sbjct: 566 GVPLSSRSSTSSVTRSSSTPVSEIISPPSSIHSQLSFP-SVSNTTTTTATVAPT 618


>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
           protein C06C3.1a protein.
          Length = 1016

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 245 GVTFFSFHTPVSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPT 406
           GV   S  +  S T SS TP+  I S   SIH  LS P  +  TT    T+ PT
Sbjct: 563 GVPLSSRSSTSSVTRSSSTPVSEIISPPSSIHSQLSFP-SVSNTTTTTATVAPT 615


>Z36719-11|CAH04695.1|  968|Caenorhabditis elegans Hypothetical
           protein C06C3.1d protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 245 GVTFFSFHTPVSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPT 406
           GV   S  +  S T SS TP+  I S   SIH  LS P  +  TT    T+ PT
Sbjct: 563 GVPLSSRSSTSSVTRSSSTPVSEIISPPSSIHSQLSFP-SVSNTTTTTATVAPT 615


>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 245 GVTFFSFHTPVSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPT 406
           GV   S  +  S T SS TP+  I S   SIH  LS P  +  TT    T+ PT
Sbjct: 563 GVPLSSRSSTSSVTRSSSTPVSEIISPPSSIHSQLSFP-SVSNTTTTTATVAPT 615


>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
           protein C06C3.1b protein.
          Length = 1019

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 245 GVTFFSFHTPVSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPT 406
           GV   S  +  S T SS TP+  I S   SIH  LS P  +  TT    T+ PT
Sbjct: 566 GVPLSSRSSTSSVTRSSSTPVSEIISPPSSIHSQLSFP-SVSNTTTTTATVAPT 618


>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
           protein C06C3.1a protein.
          Length = 1016

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 245 GVTFFSFHTPVSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPT 406
           GV   S  +  S T SS TP+  I S   SIH  LS P  +  TT    T+ PT
Sbjct: 563 GVPLSSRSSTSSVTRSSSTPVSEIISPPSSIHSQLSFP-SVSNTTTTTATVAPT 615


>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
          Length = 1016

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 245 GVTFFSFHTPVSYTISSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLPT 406
           GV   S  +  S T SS TP+  I S   SIH  LS P  +  TT    T+ PT
Sbjct: 563 GVPLSSRSSTSSVTRSSSTPVSEIISPPSSIHSQLSFP-SVSNTTTTTATVAPT 615


>Z82076-5|CAB04935.2|  307|Caenorhabditis elegans Hypothetical
           protein W07G1.3 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 290 SSLTPLLHISSFTQSIHFFLSLPLPLYPTTFIVNTLLP 403
           S  +P     +  Q  +++  LPLP  P TF  +TL+P
Sbjct: 87  SPASPDFSCPTTPQPSNYYTPLPLPQQPPTFDPSTLMP 124


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 441  LYGHVMRRNENKVGKRVLTMNVVGYRGRGRLKKKWMDCVKDDMCKRGVSEEIVYDT 274
            L G    +N +K+   V  +NVVG   +  + +  +D V DD+  + +   +V  T
Sbjct: 2704 LIGSGTGKNISKLSSGVYQVNVVGKDEKKEIVRILLDDVADDVTSKDIEYHVVSST 2759


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,538,249
Number of Sequences: 27780
Number of extensions: 295641
Number of successful extensions: 730
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)