Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1050
(611 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 25 0.58
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 24 1.3
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 24 1.3
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 24 1.3
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 24 1.3
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 5.4
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 5.4
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 7.2
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 21 7.2
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 9.5
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 9.5
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 9.5
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 9.5
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 9.5
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 9.5
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 9.5
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 9.5
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 25.0 bits (52), Expect = 0.58
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +1
Query: 268 YSCIIHYFFAHSPLTH-IVLHA 330
YSC + F H +TH +++HA
Sbjct: 1344 YSCYVENTFGHDTVTHQLIVHA 1365
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 1 RTRERXRTEQPLREGAEIKTGL*NFKINNCAYSILFLISHNNQKQGYMYEYM 156
+ R R RTE+ +I + L N I+N Y + ++ N+K Y Y+
Sbjct: 64 KERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 1 RTRERXRTEQPLREGAEIKTGL*NFKINNCAYSILFLISHNNQKQGYMYEYM 156
+ R R RTE+ +I + L N I+N Y + ++ N+K Y Y+
Sbjct: 64 KERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 1 RTRERXRTEQPLREGAEIKTGL*NFKINNCAYSILFLISHNNQKQGYMYEYM 156
+ R R RTE+ +I + L N I+N Y + ++ N+K Y Y+
Sbjct: 64 KERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 1 RTRERXRTEQPLREGAEIKTGL*NFKINNCAYSILFLISHNNQKQGYMYEYM 156
+ R R RTE+ +I + L N I+N Y + ++ N+K Y Y+
Sbjct: 64 KERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 5.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 435 GHVMRRNENKVGKRVLTMNVVGYRGR 358
G + N K T+ +VGY+GR
Sbjct: 70 GSIPGVNSTSENKTFPTIKIVGYKGR 95
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.8 bits (44), Expect = 5.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 435 GHVMRRNENKVGKRVLTMNVVGYRGR 358
G + N K T+ +VGY+GR
Sbjct: 70 GSIPGVNSTSENKTFPTIKIVGYKGR 95
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.4 bits (43), Expect = 7.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 62 VSETSKLITVLTLFYF 109
VSETS ++VLT+ F
Sbjct: 113 VSETSSYVSVLTIVAF 128
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 21.4 bits (43), Expect = 7.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +3
Query: 405 PYFHFVSSHVHTDKSINGYG 464
P+ HF+ S +D ++ G+G
Sbjct: 279 PFQHFLDSFAGSDVTVLGWG 298
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.0 bits (42), Expect = 9.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -3
Query: 540 TSDTVMDLCLRYQYFRFLTYIF 475
T D + + YF FLT+ F
Sbjct: 461 TIDVIARITFPVAYFMFLTFFF 482
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.0 bits (42), Expect = 9.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -3
Query: 540 TSDTVMDLCLRYQYFRFLTYIF 475
T D + + YF FLT+ F
Sbjct: 447 TIDVIARITFPVAYFMFLTFFF 468
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.0 bits (42), Expect = 9.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -3
Query: 540 TSDTVMDLCLRYQYFRFLTYIF 475
T D + + YF FLT+ F
Sbjct: 481 TIDVIARITFPVAYFMFLTFFF 502
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.0 bits (42), Expect = 9.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -3
Query: 540 TSDTVMDLCLRYQYFRFLTYIF 475
T D + + YF FLT+ F
Sbjct: 430 TIDVIARITFPVAYFMFLTFFF 451
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.0 bits (42), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 528 VMDLCLRYQYFRFLTYIFARIIRIHLWI 445
V +L R Y F TYI + +I + WI
Sbjct: 206 VFNLRRRLGYHLFHTYIPSALIVVMSWI 233
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.0 bits (42), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 58 TGL*NFKINNCAYSILFLI 114
TGL N+++NN Y+ L I
Sbjct: 11 TGLENWRVNNSNYTELLPI 29
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.0 bits (42), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 252 HFSPSILLYHTLFLRSLPSYTYRPSRNPSISS 347
H S S H++ LR+LP RP + +S
Sbjct: 610 HASASEESVHSMELRTLPCLLPRPKSENNFAS 641
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.0 bits (42), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 252 HFSPSILLYHTLFLRSLPSYTYRPSRNPSISS 347
H S S H++ LR+LP RP + +S
Sbjct: 578 HASASEESVHSMELRTLPCLLPRPKSENNFAS 609
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,871
Number of Sequences: 438
Number of extensions: 4050
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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