Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1050
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26440.1 68415.m03172 pectinesterase family protein contains ...    28   4.2  
At5g52500.1 68418.m06513 expressed protein strong similarity to ...    28   5.6  

>At2g26440.1 68415.m03172 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 547

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 255 FSPSILLYHTLFLRSLPSYTYRPSRNPSISS 347
           F+ S LL+   F  S+ SY+Y+PS NP  +S
Sbjct: 6   FNLSSLLFLLFFTPSVFSYSYQPSLNPHETS 36


>At5g52500.1 68418.m06513 expressed protein strong similarity to
           unknown protein (emb|CAB68146.1)
          Length = 363

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 267 ILLYHTLFLRSLPSYTYRPSRNPSISS*VYLFL 365
           ILL+ TLFL +L ++    SR P+ISS  + FL
Sbjct: 49  ILLFLTLFLFTLSTFEEPSSRFPAISSPHWRFL 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,638,058
Number of Sequences: 28952
Number of extensions: 268719
Number of successful extensions: 632
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)