Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1047
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    42   4e-05
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    25   4.0  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.0  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 41.9 bits (94), Expect = 4e-05
 Identities = 21/65 (32%), Positives = 36/65 (55%)
 Frame = -1

Query: 443 FNNFLGLFPYIFTRTRHLTISVSLSIPL*LRFILYG*IKNTNHIFIHIIPQGTPYILIPF 264
           F+N L L PY +  T  L  ++ LSI + +   + G  ++   +F   +P GTP  LIP 
Sbjct: 106 FSNLLRLIPYGYATTAQLIFTLGLSISILIGATILGLQQHKAKVFGLFLPSGTPTPLIPL 165

Query: 263 IVILK 249
           +V+++
Sbjct: 166 LVLIE 170



 Score = 35.1 bits (77), Expect = 0.005
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = -3

Query: 252 ETIRNIIRPGTLAVRLTANIIAGHLLITLL-----RRTGTN-ISFYXXXXXXXXXXXXXX 91
           E +  I R  +L +RL ANIIAGHL +++L        G N I+F               
Sbjct: 170 EFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMGLNLITFIIGFLPITVLVAISL 229

Query: 90  LESAVAIIQSYVITIL 43
           LE  +A IQ+YV  IL
Sbjct: 230 LEFGIAFIQAYVFAIL 245


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 303 YNSTRNTLYFNTIYSNFETIRNII 232
           Y    N  Y  +IYS+F T++N++
Sbjct: 175 YADQVNDAYLRSIYSSFGTLQNVV 198


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 446 FFNNFLGLFPYIFTRTRHLTISVSLSIPL*LRF 348
           F +++L +   + T    +T+ +SLSIPL L F
Sbjct: 274 FVSDYLWVIAMLMTSPLLVTVGMSLSIPLALFF 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,169,461
Number of Sequences: 5004
Number of extensions: 17421
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)