Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1047
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0247 + 21844311-21845646,21845991-21846118                       30   0.97 
08_01_0019 - 146078-146761                                             29   1.3  
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406...    28   3.0  
11_06_0703 + 26444128-26446215,26446525-26447226                       28   3.9  

>09_06_0247 + 21844311-21845646,21845991-21846118
          Length = 487

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -1

Query: 422 FPYIFTRTRHLTIS 381
           FPY FTRT+HLT+S
Sbjct: 5   FPYSFTRTKHLTLS 18


>08_01_0019 - 146078-146761
          Length = 227

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 270 TIYSNFETIRNIIRPGTLAVRLTANIIAGHLLITL 166
           T++S F +  N+  P  LAV +T +  AG+LL+T+
Sbjct: 133 TVWSPFLSGNNVQLPPYLAVSITQDETAGYLLVTI 167


>09_06_0246 +
           21837144-21838194,21838692-21840038,21840576-21840656,
           21842740-21842924
          Length = 887

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 422 FPYIFTRTRHLTI 384
           FPY FTRT+HLT+
Sbjct: 360 FPYSFTRTKHLTL 372


>11_06_0703 + 26444128-26446215,26446525-26447226
          Length = 929

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 327 KYKSHIYSYNSTRNTLYFNTIYSNFETIRNIIRPGTLAVRLTANIIAGHLL-ITLLRRTG 151
           +YK   Y  + +++   +N ++     +R +   GTL   + ++I  G+L+ + L+   G
Sbjct: 539 QYKVRTYRTSYSKSLRVYNPLFKRLTYLRVLDLTGTLVQSIPSHI--GNLIHMRLINLDG 596

Query: 150 TNIS 139
           TNIS
Sbjct: 597 TNIS 600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,376,496
Number of Sequences: 37544
Number of extensions: 85430
Number of successful extensions: 200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)