Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1047
         (446 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   5.3  
SB_27863| Best HMM Match : rve (HMM E-Value=4.7e-35)                   27   7.1  
SB_27381| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 315  HIYSYNSTRNTLYFNTIYSNFETIRNIIRPGTLA-VRLTANIIAGHL 178
            H  +Y   R+   F   Y  +  +RN IRP T    RL      GH+
Sbjct: 6600 HFTTYREGRHAKIFQGNYDRYTVVRNSIRPVTARYCRLRPRTWHGHI 6646


>SB_27863| Best HMM Match : rve (HMM E-Value=4.7e-35)
          Length = 742

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -1

Query: 392 LTISVSLSIPL*LRFILYG*I---KNTNHIFIHIIPQGTPYI--LIPFIV 258
           LT++ S S  +   F ++G +   KNTN + I  IP G P I  +I F++
Sbjct: 567 LTMTYSASCVVKTLFAVFGFLSFKKNTNQVVILNIPHGIPRIVGIIAFVI 616


>SB_27381| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1392

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -1

Query: 392  LTISVSLSIPL*LRFILYG*I---KNTNHIFIHIIPQGTPYI--LIPFIV 258
            LT++ S S  +   F ++G +   KNTN + I  IP G P I  +I F++
Sbjct: 1217 LTMTYSASCVVKTLFAVFGFLSFKKNTNQVVILNIPHGIPRIVGIIAFVI 1266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,914,308
Number of Sequences: 59808
Number of extensions: 108447
Number of successful extensions: 258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)