Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1047
         (446 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   4.9  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    22   8.6  
AY187040-1|AAO39754.1|  211|Anopheles gambiae putative antennal ...    22   8.6  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 309 YSYNSTRNTLYFNTIYSNFETIRNIIR 229
           Y Y  + NT+ F  IY + E I  I R
Sbjct: 116 YGYALSNNTILFGNIYPSAEYIGVISR 142


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 322 VFLIHPYNINLSHRGIDKDTDIVKCL 399
           VF+I P+    S+ GI+K   +++CL
Sbjct: 35  VFIIDPWFAGSSNVGINKWRFLLQCL 60


>AY187040-1|AAO39754.1|  211|Anopheles gambiae putative antennal
           carrier protein A5 protein.
          Length = 211

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 296 PQGTPYILIPFIVILKPSEILFD 228
           PQGT      F+V  +PS I+F+
Sbjct: 136 PQGTGLHRYVFLVYKQPSRIVFN 158


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,325
Number of Sequences: 2352
Number of extensions: 3507
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 37843779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)