Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1047
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   2.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   4.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.1  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 146 LVPVLLNNVINKCPAIMLAVNRT 214
           L+P +LNN  N+C +  + +  T
Sbjct: 56  LLPEVLNNHCNRCTSRQIGIANT 78


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 309 YSYNSTRNTLYFNTIYSNFETI 244
           Y+YN+    LY+     N E I
Sbjct: 331 YNYNNYNKKLYYKNYIINIEQI 352


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 333 N*KYKSHIYSYNSTRNTLYFNTIY 262
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 333 N*KYKSHIYSYNSTRNTLYFNTIY 262
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 333 N*KYKSHIYSYNSTRNTLYFNTIY 262
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 333 N*KYKSHIYSYNSTRNTLYFNTIY 262
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 255 NYYKWY*NIGCSLWNYMNKYV 317
           NY  WY N   +L N +N ++
Sbjct: 204 NYSGWYLNHDYNLENKLNYFI 224


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 309 YSYNSTRNTLYFNTIY 262
           Y+YN+    LY+N  Y
Sbjct: 98  YNYNNNCKKLYYNINY 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,640
Number of Sequences: 438
Number of extensions: 1532
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)