Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1047
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to A...    50   7e-07

>At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to
           ATPase subunit 6 GI:515963 from [Raphanus sativus];
           contains Pfam profile: PF00119 ATP synthase, A subunit
          Length = 385

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 23/65 (35%), Positives = 37/65 (56%)
 Frame = -1

Query: 443 FNNFLGLFPYIFTRTRHLTISVSLSIPL*LRFILYG*IKNTNHIFIHIIPQGTPYILIPF 264
           F N  G+ PY FT T H  I+++LS  + +   + G  ++  H F  ++P G P  L PF
Sbjct: 233 FCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPF 292

Query: 263 IVILK 249
           +V+L+
Sbjct: 293 LVLLE 297



 Score = 33.9 bits (74), Expect = 0.050
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -3

Query: 252 ETIRNIIRPGTLAVRLTANIIAGHLLITLLRRTG-----TNISFY--XXXXXXXXXXXXX 94
           E I    R  +L +RL AN++AGH L+ +L          N  FY               
Sbjct: 297 ELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALT 356

Query: 93  XLESAVAIIQSYVITILRTLYYSE 22
            LE  VAI+Q+YV TIL  +Y ++
Sbjct: 357 GLELGVAILQAYVFTILICIYLND 380


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,624,805
Number of Sequences: 28952
Number of extensions: 79290
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)