Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1044
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    27   1.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.0  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   7.0  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   7.0  
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    25   7.0  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   9.2  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   9.2  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   9.2  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   9.2  

>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 517 PISHDDVFRSDFTVSLYLKAAFAVT 443
           PI++DD+F+S   VSL  + AF V+
Sbjct: 739 PIAYDDLFKSIDLVSLLYQIAFGVS 763


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 152  WSIINSRIPRDCRELNYQIHTQFQTSNSH 238
            W +I +RIP+ C + +Y ++  ++   SH
Sbjct: 1437 WQVI-TRIPQYCHDTHYGVYDAYRDFRSH 1464


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -3

Query: 455 VRCHPQSCYVNSERAPNRIEPRREGVVAACLQFFESHHGVGLHC 324
           + C  Q C      A   +E  R+G++ +  +F++    V + C
Sbjct: 226 ILCIHQLCEKKQFSAQQEVEQLRKGILQSLCEFYDDLRKVKIRC 269


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 97  DEKLSEGEKKLSHNILAILEHYKQPDP--TGLPGAKLPDPYPV 219
           D+ +S G   + HN +  ++H    DP  TGLP     D  P+
Sbjct: 265 DDSVSAGAAFIPHNPMDSIDHLDVNDPTATGLPVLPASDIDPL 307


>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 43  ILFQFRNCQEIPEEVSSEDEKLSEGEKKLS 132
           ++FQ++ C E+ E + S +  + E  K LS
Sbjct: 154 MVFQYQRCVELNENLESLENGVEEVSKSLS 183


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 320 RSNGGPRRDDSRKIASTRQLH 382
           +SNG   +DD R+ A T+ +H
Sbjct: 360 KSNGETEKDDGRRRALTKAIH 380


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 58  RNCQEIPEEVSSEDEKLSEGEKKLSHNILAILEHY 162
           ++ +E+PEEVS     ++E    L H   ++L+H+
Sbjct: 521 KDYEELPEEVSETSINIAEHTPVLKHT-SSLLDHH 554


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 112 PKVF-HLHSTPPR--VFLGSS*TG 50
           P+VF HLH TPPR  +F G   TG
Sbjct: 395 PEVFLHLHITPPRGVLFHGPPGTG 418


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = +1

Query: 64  CQEIPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLP 189
           C E  + +     K++ G      NI A+L H     P   P
Sbjct: 161 CYENADTLGINPNKIAVGGSSAGGNIAAVLSHKVAASPANFP 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,662
Number of Sequences: 5004
Number of extensions: 37726
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)