Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1044
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0021 + 10681730-10681816,10681868-10681913,10682296-106823... 31 0.76
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 30 1.0
10_01_0228 + 2417187-2418061,2418127-2418319,2419011-2419025,241... 29 3.1
02_03_0382 + 18352508-18352841,18353817-18354028,18354190-183542... 29 3.1
10_08_0307 - 16654691-16654890,16656230-16656698 28 4.0
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538... 28 5.3
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232 28 5.3
03_02_0536 - 9284079-9286034 27 7.1
09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151... 27 9.3
06_03_0809 + 24814590-24816593 27 9.3
>06_02_0021 +
10681730-10681816,10681868-10681913,10682296-10682388,
10682802-10682888,10683297-10683331
Length = 115
Score = 30.7 bits (66), Expect = 0.76
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 1 QRYRMKIALCLVLVILFQFRNCQEIPEEVSSEDEKLSEGEK 123
Q Y KIA C + + F PE V +DEK E EK
Sbjct: 21 QLYITKIAFCYITKVTFVNTFDLACPESVQDDDEKRQESEK 61
>06_03_0151 +
17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -3
Query: 467 LEGRVRCHP--QSCYVNSERAPNRIEPRREGVV-AACLQFFESHHGVGLHCSDIG 312
+E +C P C+V + P+ I P ++ AC F + GLHC D G
Sbjct: 423 MESGRQCGPVLMGCFVTVKAPPSSILPSGSSLLDKACETSFSEYELNGLHCQDTG 477
>10_01_0228 +
2417187-2418061,2418127-2418319,2419011-2419025,
2419859-2419975
Length = 399
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 401 IEPRREGVVAACLQFFESHHGVGLHCSDIG 312
+EP R G L F E H+ V L C+DIG
Sbjct: 296 VEPGRHGAAPTILGFVEEHNEV-LLCTDIG 324
>02_03_0382 +
18352508-18352841,18353817-18354028,18354190-18354277,
18355017-18355474
Length = 363
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +1
Query: 79 EEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYP 216
E+ +DEK E EK S N + E K+ DP+ L A L YP
Sbjct: 286 EKKEGDDEKEKEKEKDDS-NAAEVEEKDKEKDPSALAAANLYMHYP 330
>10_08_0307 - 16654691-16654890,16656230-16656698
Length = 222
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 80 RRCRVKMKNFRKAKKNSVIISWLFWSIINSRI 175
R C + ++ R+ K +++SW W NSR+
Sbjct: 87 RHCPLGVEKRRRVKSLLILVSWEIWKERNSRV 118
>05_01_0600 +
5381879-5381995,5382061-5382216,5382521-5382604,
5382708-5382833,5383801-5383845,5384423-5384554,
5384682-5384777,5384880-5385041,5385156-5385300,
5385753-5385825,5386002-5386062,5386419-5386529,
5386620-5387093,5387173-5387207,5387760-5388318
Length = 791
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 79 EEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGL 186
E+V +D KLSE L +L+IL H+K+ + G+
Sbjct: 90 EQVLLDDVKLSEQVMDLIFFVLSILSHWKKENHLGV 125
>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
Length = 549
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = +1
Query: 70 EIPEEVSSEDEKLSEGEKKLSH-----NILAILEHYKQPDPTGL 186
+I E+ + E E L++GE+K SH N++A +E + P+ L
Sbjct: 410 KIEEQETPEKENLTKGEEKESHDMMLDNVVAKIEEQETPEKENL 453
>03_02_0536 - 9284079-9286034
Length = 651
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 76 PEEVSSEDEKLSEGEKKLSH-NILAILEHYKQPDPTGLPGAKLPDPYPVP 222
P E E K E E ++ L E YK+P+P + P+P P P
Sbjct: 365 PREPEPEPVKEEEPEPDMNEIKALPAPEDYKEPEPEKVEEEVKPEPPPQP 414
>09_04_0570 -
18614227-18614574,18614729-18614842,18614933-18615130,
18615290-18615463,18615546-18615752,18615886-18616180,
18616269-18617275
Length = 780
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 440 EGDSERGLQVERDGKIRAENIVMTYRPA 523
EG ER VERDGK + + + Y PA
Sbjct: 8 EGREERSTDVERDGK-QGKEVESDYEPA 34
>06_03_0809 + 24814590-24816593
Length = 667
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 139 ILAILEHYKQPDPTGLPGAKLPDPYPVPDV 228
+L L+H +PD T LP P P P P V
Sbjct: 233 MLVPLKHRPKPDVTVLPEPGPPSPAPAPAV 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,525
Number of Sequences: 37544
Number of extensions: 269643
Number of successful extensions: 801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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