Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1044
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37016| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)           27   7.2  
SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_2038| Best HMM Match : rve (HMM E-Value=0.0076)                     27   9.6  
SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8)                27   9.6  
SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)         27   9.6  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_37016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 321 GAMEAHA-VMTLEKLQARGNYTFATWFNSVRGPFTVHITGLRVTANAA 461
           G+M A   ++ L+ +Q RG+Y    WF +  G + +++  +R+T + A
Sbjct: 88  GSMNALTLILDLQLIQIRGSYMSDFWFGTSVGYYDLNLNKVRITKHLA 135


>SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)
          Length = 533

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 252 YNFKNIALYGTNEFRLNY 305
           +++++I LYGTN+F  NY
Sbjct: 169 FDYQSIMLYGTNDFSSNY 186


>SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +3

Query: 246 WNYNFKNIALYGTNEFRLNYVKADIGAMEAHAVMTLEKLQARGNYTFATWFNSVRGPFTV 425
           WN   K +A      +R  YVK D  A +A  +  L + Q   +       NS R PF +
Sbjct: 551 WNLTIKPLAQVRRQSYRWAYVKPDSEASDAEFLEGLHRTQKNKS------INSGRKPFPM 604

Query: 426 HI 431
            I
Sbjct: 605 SI 606


>SB_2038| Best HMM Match : rve (HMM E-Value=0.0076)
          Length = 656

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 52  QFRNCQEIPEEVSSEDEKLSEGEKKLSHNILAILEH 159
           Q   C+E  +E   ED  LS+ ++KL+  ++  ++H
Sbjct: 548 QVHECKEGIKEWKKEDSALSKAKEKLNEEMIEEIDH 583


>SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8)
          Length = 267

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 517 PISHDDVFRSDFTVSLYLKAAFAVTLSPVM*TVNGPRTELNHVAK 383
           PIS  D+F  D T+    K AF   LS     +  P  E+N++ K
Sbjct: 217 PISEPDIFDGDATLFQPWKRAFKAMLSD---AIVSPTQEINYLRK 258


>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
          Length = 1584

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 517 PISHDDVFRSDFTVSLYLKAAFAVTLSPVM*TVNGPRTELNHVAK 383
           PIS  D+F  D T+    K AF   LS     +  P  E+N++ K
Sbjct: 194 PISEPDIFDGDATLFQPWKRAFKAMLSD---AIVSPTQEINYLRK 235


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +1

Query: 163 KQPDPTGLPGAK----LPDPYPVPDVK 231
           + PDPT +P  +    +PDP PVP V+
Sbjct: 488 EMPDPTPVPKVQTNIDMPDPIPVPKVQ 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,462,569
Number of Sequences: 59808
Number of extensions: 300906
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)