Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1044
         (529 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    26   0.90 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   1.6  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   2.1  
AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8...    23   8.4  

>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 25.8 bits (54), Expect = 0.90
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 7   YRMKIALCLVLVILFQFRNCQEIPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGL 186
           Y   + LC+ L +  +  +  E+P ++  + ++L   +K       A ++  +QP P   
Sbjct: 4   YAFALVLCVGLAVGAEVDSVPEVPSDLQQQLDELQLADKP-----EAPVDDAEQPLPPN- 57

Query: 187 PGAKLPD--PYPVPD 225
            G +LP+  P PVP+
Sbjct: 58  -GDELPEDAPEPVPE 71


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 106  LSEGEKKLSHNILAILEHYKQPDP 177
            LS GEK LS   L    HY +P P
Sbjct: 1187 LSGGEKTLSSLALVFALHYYKPSP 1210


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 380 VVAACLQFFESHHGVGLHCSDIGLNVI 300
           ++  C+ F + HH     CS++G+ +I
Sbjct: 437 LILMCISFLQQHHQKPNACSNLGVLLI 463


>AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8
           protein.
          Length = 700

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 276 YGTNEFRLNYVKADIGAMEAHAVMTLEKLQARGNYTFATW 395
           +G N    + V  D G      V+T++ L    + TFATW
Sbjct: 52  FGPNSPASSQVSNDTGVPPT--VVTIKDLDELPDLTFATW 89


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,617
Number of Sequences: 2352
Number of extensions: 11008
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48628785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)