Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1044
(529 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 31 0.67
Z68120-3|CAA92201.1| 266|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 29 2.1
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 3.6
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 28 3.6
AF047658-5|AAC04416.3| 434|Caenorhabditis elegans Hypothetical ... 28 4.8
U40942-4|AAC47069.2| 486|Caenorhabditis elegans Hypothetical pr... 27 6.3
U40942-3|AAU05564.1| 487|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z70212-6|CAA94166.1| 336|Caenorhabditis elegans Hypothetical pr... 27 8.3
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 30.7 bits (66), Expect = 0.67
Identities = 10/38 (26%), Positives = 25/38 (65%)
Frame = +1
Query: 67 QEIPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPT 180
+++PE+ + E++SE ++KL ++ +++ +PD T
Sbjct: 20 KKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTT 57
>Z68120-3|CAA92201.1| 266|Caenorhabditis elegans Hypothetical
protein T24C2.3 protein.
Length = 266
Score = 29.5 bits (63), Expect = 1.6
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -1
Query: 322 PISALT*FRRNSLVPYKAMFLKL*FQE*VTV*RLELGMDLVV*-LPAVPWDPAVYNAPE* 146
PI + R +V +AMF+ L V L+LG DLV A+P Y+ PE
Sbjct: 127 PIGDSKRWTRKMIVSIEAMFVDL-------VKFLKLGDDLVKRNTAALPLSFDSYDVPEL 179
Query: 145 PRYYD*VFFRLPKVFHLHS 89
P D V +++P+ FH ++
Sbjct: 180 PASCDFVSYQMPQQFHYYT 198
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 103 KLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPDVK 231
K S+GEKK+ N + + P P P + P+P P P V+
Sbjct: 2795 KNSKGEKKVKENTAPVQQ---APVPVSPPREETPEPTPSPPVR 2834
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 73 IPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDP 210
+P + S +S + L+H +A + P P P KLPDP
Sbjct: 235 VPPPIPSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDP 280
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 73 IPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDP 210
+P + S +S + L+H +A + P P P KLPDP
Sbjct: 235 VPPPIPSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDP 280
>AF047658-5|AAC04416.3| 434|Caenorhabditis elegans Hypothetical
protein K03H6.5 protein.
Length = 434
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +1
Query: 25 LCLVLVILFQFRNCQEIPEEVSSEDEKLSEGEKKLSHNILAIL 153
L + L+ L + R+ +E+ ++ ++E EKK++H +LAI+
Sbjct: 242 LNISLIRLVKRRHSEELLVRNAAGPSSMAEQEKKMTHTVLAIV 284
>U40942-4|AAC47069.2| 486|Caenorhabditis elegans Hypothetical
protein K02E10.4a protein.
Length = 486
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 383 GVVAACLQFFESHHGVGLHCSDIGLNVI 300
G+ C Q S G +HC+D+GL I
Sbjct: 163 GLPMKCSQIARSCPGENMHCADVGLGYI 190
>U40942-3|AAU05564.1| 487|Caenorhabditis elegans Hypothetical
protein K02E10.4b protein.
Length = 487
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 383 GVVAACLQFFESHHGVGLHCSDIGLNVI 300
G+ C Q S G +HC+D+GL I
Sbjct: 164 GLPMKCSQIARSCPGENMHCADVGLGYI 191
>Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical
protein F56G4.4 protein.
Length = 470
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 67 QEIPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPDV 228
+++ +E S EDE+ E L + EH P P L +L +P +P++
Sbjct: 321 EDVSDEESDEDEEEFEIIGTPEREALVLREHSSTPPPEELQ-EQLEEPPKIPEI 373
>Z70212-6|CAA94166.1| 336|Caenorhabditis elegans Hypothetical
protein R04D3.8 protein.
Length = 336
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 28 CLVLVILFQFRN-CQEIPEEVSS 93
CL LV+LFQFR +P EV S
Sbjct: 57 CLCLVVLFQFRQVSSNVPVEVRS 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,286,236
Number of Sequences: 27780
Number of extensions: 221616
Number of successful extensions: 762
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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