Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1044
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.48 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.5  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 249 NYNFKNIALYGTNEFRLNYVKADI 320
           NY+ KN+  Y   E++L+Y   D+
Sbjct: 205 NYSSKNMREYNDPEYKLDYFMEDV 228


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 226 RLELGMDLVV*LPAVPWDPAVYNAPE*PRYY 134
           ++E+G+DL    P+V WD     A    +YY
Sbjct: 185 KVEIGIDLREYYPSVEWDILGVPAERHKKYY 215


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 228 DVWNWVWIW 202
           D WNWV+ W
Sbjct: 625 DQWNWVYEW 633


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 249 NYNFKNIALYGTNEFRLNYVKADI 320
           NY+ K +  Y   E++L+Y   D+
Sbjct: 205 NYSSKYMREYNDPEYKLDYFMEDV 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,353
Number of Sequences: 438
Number of extensions: 2611
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)