Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1044
(529 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28630.1 68415.m03481 beta-ketoacyl-CoA synthase family protein 31 0.63
At1g18760.1 68414.m02339 zinc finger (C3HC4-type RING finger) fa... 30 0.84
At3g22620.1 68416.m02856 protease inhibitor/seed storage/lipid t... 29 1.9
At2g27980.1 68415.m03391 expressed protein 29 2.6
At2g02770.1 68415.m00220 COP1-interacting protein-related simila... 29 2.6
At5g25050.1 68418.m02969 integral membrane transporter family pr... 27 5.9
At4g08370.1 68417.m01382 proline-rich extensin-like family prote... 27 5.9
At1g74690.1 68414.m08650 calmodulin-binding family protein low s... 27 5.9
At4g14280.1 68417.m02201 hypothetical protein 27 7.8
>At2g28630.1 68415.m03481 beta-ketoacyl-CoA synthase family protein
Length = 476
Score = 30.7 bits (66), Expect = 0.63
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Frame = +2
Query: 128 SVIISWLF---WSIINSRIPRDCRELNYQIH 211
S+++S+LF W +I+S+ +DC L+YQ H
Sbjct: 9 SLLLSYLFFKIWKLIDSKQDKDCYILDYQCH 39
>At1g18760.1 68414.m02339 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 224
Score = 30.3 bits (65), Expect = 0.84
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 34 VLVILFQFRNCQEIPEEVSSEDEKLSEGEKKLSHNILAILE 156
+LV L F N + I EE E+E LSE E ++ + A LE
Sbjct: 102 LLVSLLIFPNDEPIEEEYEIEEEDLSEEEDQIEEAVRASLE 142
>At3g22620.1 68416.m02856 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 203
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 400 LNHVAKV*LPRACNFSRV-ITAWASIAPISA 311
+N V LPRACN RV + A+IAP +A
Sbjct: 87 INRTTAVSLPRACNMPRVPLQCQANIAPAAA 117
>At2g27980.1 68415.m03391 expressed protein
Length = 1037
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 64 CQEIPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAK-LPD 207
C+EI + + + GE+KLS+NIL L +QP+ P K PD
Sbjct: 807 CEEINTTLGN---LIVRGEEKLSNNILNFLRKKEQPNEENCPDYKTTPD 852
>At2g02770.1 68415.m00220 COP1-interacting protein-related similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646, COP1-interacting protein 4.1
(CIP4.1) [Arabidopsis thaliana] GI:13160650
Length = 548
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 106 LSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDP 210
L E E+K+ H++LA+ E + D A +PDP
Sbjct: 454 LEEMERKIKHDVLALAERFYSADEVKFLSA-IPDP 487
>At5g25050.1 68418.m02969 integral membrane transporter family
protein similar to biopterin transporter (GI:3377706)
[Leishmania mexicana]; contains 7 transmembrane domains;
contains Pfam PF03092: BT1 family; contains TIGRFAMS
TIGR00788: folate/biopterin transporter
Length = 499
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 19 IALCLVLVILFQFRNCQEIPEEVSSEDEKLSEGEKKLSHNI-LAILEH 159
+ LC + ++ +N ++P+E+ ED + EK+ + N+ LA L H
Sbjct: 447 LPLCFLFLVPKGDQNTFKLPDEIMGEDSDEEKDEKEGTRNLELASLVH 494
>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 350
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 181 PWDPAVYNAPE*PRYYD*VFFRLPKVFHLHSTPP 80
P P VYN+P P Y V+ +P++ ++S+PP
Sbjct: 177 PPPPYVYNSPPPPPY---VYESVPRIPFIYSSPP 207
>At1g74690.1 68414.m08650 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 587
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 76 PEEVSSEDEKLSEGEKKLSHNILAILEH 159
PEE+S ++ +L EG+ S N+ + +H
Sbjct: 75 PEEISDDEIELPEGKSTDSQNVAPVQDH 102
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 76 PEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDP 177
PEE+ E+ E++L+ ++ IL+ Y+QP P
Sbjct: 688 PEELRGMFEEAGVTEEELAKALINILKRYEQPVP 721
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,687,361
Number of Sequences: 28952
Number of extensions: 208627
Number of successful extensions: 641
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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