Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1043
         (460 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   2.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   4.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   9.6  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = -1

Query: 322 CTLTPHVRSPPRSEPG*GRGATASTLQPDGAAHPKDAQPTEPSRRIEGS 176
           C    +   PP ++   G+G       P GA  P     + P++R   S
Sbjct: 44  CNKLSNKSPPPLADAAVGKGFHPWKKSPQGAPSPSSTPSSLPTQRTSTS 92


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 119 PAAPSGRPDGLPSR 160
           PAAP+ R +G P R
Sbjct: 344 PAAPANRGNGFPKR 357


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 88  RLPGRDAIHRRP 53
           RLP RDA+ +RP
Sbjct: 79  RLPLRDAVEKRP 90


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 89  QAAGSGRDTPSTGRSIHSTAAR*IAGS 9
           Q AG GR  P   RS     A  +AG+
Sbjct: 323 QLAGGGRRGPGPARSRRHLPAHLVAGT 349


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 47  SDRSTVYRVPTRQPGSGPAGYSGTPAAPSGRP 142
           SDR +  R P  +    P    G P A   RP
Sbjct: 200 SDRPSSGRSPRTRRVKKPGAKQGAPTAEEKRP 231


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 249 VDAVAPLPHPGSD 287
           V  +A LP PGSD
Sbjct: 403 VHLIANLPSPGSD 415


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,791
Number of Sequences: 336
Number of extensions: 2644
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)