Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1043
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.11
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 1.0
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 27 1.4
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 2.4
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 5.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.3
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 7.3
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 9.7
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 24 9.7
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 24 9.7
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 30.7 bits (66), Expect = 0.11
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Frame = -3
Query: 374 EQTAGPRILGPTH*TTPLHSYTPRPIASEVRTRMR*GGYRVNTTTRRRGSPQGRPADGAF 195
++ P+ G T ++T PI++ +R R G R N RRRG+ +
Sbjct: 134 QKPLAPKANGKEKWVTITPNFTHTPISNRKSSRSRNDGSRRNGNGRRRGN------YSSH 187
Query: 194 EANRRL*NVGRLGTAARRAAQTVPLVS-----RNTPLDQNQAAGSGRDTPSTGRSIHSTA 30
+N+R N R A+R + P NT Q ++ +G++ P T S A
Sbjct: 188 GSNKRQTNYSREKDASRSIDSSNPSAEYRDDINNTFGSQTVSSANGKEVPQTSEDSSSQA 247
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.5 bits (58), Expect = 1.0
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 329 TPLHSYTPRPIASEVRTRMR*G--GYRVNTTTRRRGSPQGRPADGAFE 192
TP+ S TP+ S TR R G G T R + +P+ P D + E
Sbjct: 149 TPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPKDASNE 196
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 56 STVYRVPTRQPGSGPAGYSGTPAAPSGRPDGLPSRDGRRFRAFDS 190
STV +P+ + ++ + S RPD LP G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 2.4
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 190 RIEGSETSAVSGRQPVGPPRRCRWCPGIPRWTRTRLPGRDA 68
R +E S S PVGPP W P T+T L + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 324 PALLHPTSDRLRGQNPDEVGGLPRQHYNQTARLTPR 217
P + D +R +N R HY QT R T R
Sbjct: 880 PKAIASLQDAVRNKNEAAYAEFSRTHYEQTRRCTLR 915
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 89 GSGPAGYSGTPAAPSGRPDG 148
G GP G+ G P G P G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGG 246
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 161 LGTAARRAAQTVPLVSRNTPLDQNQAAGSGRDTPSTGR 48
L T + + Q +VS +D N++ SG TPS R
Sbjct: 17 LETDSMESGQQQNMVSSTPSIDMNESDCSGTGTPSEER 54
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 320 HSYTPRPIASEVRTRMR*GGYRVNTT 243
H + P P E+R + + G YR N T
Sbjct: 1723 HLHNPLPFELEIRIKRKDGVYRWNLT 1748
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -1
Query: 262 ATASTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSGRQPV 143
+T + + G+ HP + + +E S+T + + R+P+
Sbjct: 386 STDNKIPESGSDHPSSQDNSSKASLVENSQTQSSTPRKPL 425
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 330 DSPALLHPTSDRLRGQNP 277
D+ AL H +DRL QNP
Sbjct: 206 DNAALAHIAADRLHTQNP 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,882
Number of Sequences: 5004
Number of extensions: 41621
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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