Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1043
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.037
SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 34 0.065
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 33 0.11
SB_31503| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_4860| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 30 1.1
SB_53293| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 1.8
SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_369| Best HMM Match : Pox_A32 (HMM E-Value=0.2) 29 2.4
SB_37336| Best HMM Match : Peptidase_S7 (HMM E-Value=2.7) 29 2.4
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 28 3.2
SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 28 4.3
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 28 4.3
SB_18258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 27 5.6
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 27 5.6
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 27 5.6
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_24570| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 27 5.6
SB_23100| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 27 7.5
SB_34755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 27 7.5
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 27 7.5
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 27 7.5
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 27 9.9
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 27 9.9
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_37920| Best HMM Match : DUF755 (HMM E-Value=2.3) 27 9.9
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 34.7 bits (76), Expect = 0.037
Identities = 35/108 (32%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Frame = -1
Query: 340 PTKRLPCTLTPHVRSPPRSEPG*G---RGATASTLQPDGAAHPKDAQPTEPSRRIEGSET 170
P R+P PH R PP P GA+ + P GA HP+ P P R+ T
Sbjct: 527 PHPRVPPPGAPHPRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVPPPGAPHPRVPPPGT 586
Query: 169 SAVSGRQPVGPPRRCRWCPGIPRWTRTRLPGRDAIHRRPVALFTPRQR 26
P G P PG P RLP A H R P QR
Sbjct: 587 PH-PRVPPPGAPHPKVPPPGAP---YQRLPYSGAYHPRLPPPGPPYQR 630
Score = 32.3 bits (70), Expect = 0.20
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Frame = -1
Query: 340 PTKRLPCTLTPHVRSPPRSEPG---*GRGATASTLQPDGAAHPKDAQPTEPSRRI--EGS 176
P R+P PH R PP P GA + P GA HP+ P P R+ G+
Sbjct: 427 PHPRVPPPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGA 486
Query: 175 ETSAVSGRQPVGPPRRCRWCPGIPRWTRTRLPGRDAIHRR 56
V P G P + PG P R+P A H R
Sbjct: 487 PHPRV---PPPGAPHQRVPPPGAP---HPRVPPPGAPHPR 520
Score = 32.3 bits (70), Expect = 0.20
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Frame = -1
Query: 340 PTKRLPCTLTPHVRSPPRSEPG*G---RGATASTLQPDGAAHPKDAQPTEPSRRI--EGS 176
P R+P PH R PP P GA + P GA HP+ P P +R+ G+
Sbjct: 447 PHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVPPPGA 506
Query: 175 ETSAVSGRQPVGPPRRCRWCPGIPRWTRTRLPGRDAIHRR 56
V P G P PG P R+P A H R
Sbjct: 507 PHPRV---PPPGAPHPRVPPPGAP---HPRVPPPGAPHPR 540
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -1
Query: 340 PTKRLPCTLTPHVRSPPRSEPG*G---RGATASTLQPDGAAHPKDAQPTEPSRRI 185
P R+P PH R PP P GA + P GA+HP+ P P R+
Sbjct: 517 PHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRV 571
Score = 31.1 bits (67), Expect = 0.46
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Frame = -1
Query: 340 PTKRLPCTLTPHVRSPPRSEPG*G---RGATASTLQPDGAAHPKDAQPTEPSRRIEGSET 170
P R+P PH R PP P GA + P GA HP+ P P R+
Sbjct: 487 PHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRV--PPP 544
Query: 169 SAVSGRQPVGPPRRCRWCPGIPRWTRTRLPGRDAIHRRPVALFTPRQR 26
A R P PP P R+P A H R TP R
Sbjct: 545 GAPHPRVP--PPGASHPRVPPPGAPHPRVPPPGAPHPRVPPPGTPHPR 590
Score = 30.7 bits (66), Expect = 0.61
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Frame = -1
Query: 331 RLPCTLTPHVRSPPRSEPG*GR---GATASTLQPDGAAHPKDAQPTEPSRRIEGSETSAV 161
R+P P+ R+ P EP GAT + GA+HP+ P P R+ S
Sbjct: 360 RVPPPDGPYTRALPPGEPYARMPPPGATHPRVPSPGASHPRVPPPGAPHPRVPPPGASHQ 419
Query: 160 SGRQPVGPPRRCRWCPGIPRWTRTRLPGRDAIHRR 56
R P P R PG P R P A H R
Sbjct: 420 RVRPPGAPHPRVP-PPGAP---HPRFPPPGAPHPR 450
Score = 29.5 bits (63), Expect = 1.4
Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Frame = -1
Query: 331 RLPCTLTPHVRSPPRSEPG*GR------GATASTLQPDGAAHPKDAQPTEPSRRI--EGS 176
R+P PH R PP PG GA + P GA HP+ P P R+ G+
Sbjct: 400 RVPPPGAPHPRVPP---PGASHQRVRPPGAPHPRVPPPGAPHPRFPPPGAPHPRVPPPGA 456
Query: 175 ETSAVSGRQPVGPPRRCRWCPGIPRWTRTRLPGRDAIHRRPVALFTPRQR 26
V P G P PG P R+P A H R P QR
Sbjct: 457 PHPRV---PPPGAPHPRVPPPGAP---HPRVPPPGAPHPRVPPPGAPHQR 500
>SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 622
Score = 33.9 bits (74), Expect = 0.065
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 74 PTRQPGSGPAGYSGTPAAPSGRPDG 148
P +QP P GY G P+AP G P G
Sbjct: 429 PPQQPSYPPGGYGGPPSAPYGAPPG 453
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 33.1 bits (72), Expect = 0.11
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 74 PTRQPGS-GPAGYSGTPAAPSGRPDGLPSRDGRR 172
P PG+ G GY G PA P GR DG+P GR+
Sbjct: 1845 PPGPPGAYGWKGYPGNPAGPPGR-DGIPGPPGRQ 1877
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +2
Query: 74 PTRQPG-SGPAGYSGTPAAPSGR--PDGLPSRDG 166
P PG G GY G PA P GR P G P G
Sbjct: 1696 PPGLPGPQGIPGYPGAPAGPPGRDGPMGPPGPSG 1729
>SB_31503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -3
Query: 215 RPADGAFEANRRL*NVGRLGTAARRAAQTVPLVSRNTPLDQNQAAGS 75
+ AD N +L NVG+L + A Q+ L ++ +DQNQ AGS
Sbjct: 207 KAADCRCSKNHQLKNVGKLDISRSAANQSKHLEKQSLQVDQNQRAGS 253
>SB_4860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 30.7 bits (66), Expect = 0.61
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Frame = -1
Query: 337 TKRLPCTLTPHVRSPPRSEPG*GRGATASTLQPDGAAHPKDAQP----TEPSRRIEGSET 170
T L C TP+ + P R+ R T +T + + K P T P+R I+G E
Sbjct: 2 TNYLTCAATPYAKQPARAT--FHRVCTETTRREASSEKGKPYHPVCAVTNPARSIQG-EN 58
Query: 169 SAVSGRQPVGPPRRCRWCPG--IPRWTRTRLP 80
SGR P R G +P TR+ P
Sbjct: 59 RTESGRMLCNNPARIHLGEGRNLPSHTRSNNP 90
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Frame = -1
Query: 403 VRLNGLHGVVSRPRAQGF*DPPT--KRLP-CTLTPHVRSPPRSEPG*GRGATASTLQPDG 233
V+L L G +P PP +R P C H RS + P R +P
Sbjct: 39 VQLKHLAGPAEKPHRPSRETPPVQPRRNPTCPAEKHHRSSKETPPVQPRNLAGPAEKPHR 98
Query: 232 AAHPKD-AQPTEPSRRIE-----GSETSAVSGRQPVGPPRR 128
+ AQP P+ E ET V R P GP ++
Sbjct: 99 SRRETQLAQPRNPTSPAEKPHQSSKETQPVQQRNPAGPAKK 139
>SB_53293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -2
Query: 300 DRLRGQNPDEVGGLPRQHYNQTARLTPRTPSRRSLRGESKALK 172
D QN VGG P Q Y A L P + +SLR SK K
Sbjct: 187 DATNSQN-SAVGGAPCQEYTSRANLNPGPTASQSLRTLSKMEK 228
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 77 TRQPGSGPAGYSGTPAAPSGRPDGLPSRDGR 169
TR P SGP+G G+P P GR GR
Sbjct: 718 TRGPVSGPSGARGSPHQPRGRASSPGGARGR 748
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 2 AARYQQSSALPWSE*SDRSTVYRVPTRQPGSGPAGYSGTPAAPSGRPDGLPSRDGRR 172
A R+ + + P E S +T+ QPGSG + ++P GR S+ G R
Sbjct: 621 APRHSKPLSTPRGESSSPNTIPDRVRNQPGSGNSSPRSGASSPLGRASSPNSKKGSR 677
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 74 PTRQPGS-GPAGYSGTPAAPSGR--PDGLPSRDG 166
P PG GP G+ G P P+G P GLP +G
Sbjct: 65 PPGLPGPPGPPGFQGPPGNPAGAIGPPGLPGPNG 98
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 74 PTRQPGSGPAGYSGTPAAPSGRPDGLPSRDG 166
P G G G G PA P G P+GLP +G
Sbjct: 239 PGNPGGPGYQGNHGNPAGPQG-PNGLPGPNG 268
>SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -2
Query: 360 PKDFRTHPLNDSPALLHPTSDRLRGQNPDEVGGLPRQHYNQTARLTPRTPSRRSLRGESK 181
P D + P +++ + P+S R R + D + + NQ+ P R+L G S
Sbjct: 605 PPDLKDAPRSEAHSKRRPSSARARANSTDSDDSVFHESANQSETGADTRPRTRTLSGRSA 664
Query: 180 A 178
A
Sbjct: 665 A 665
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 29.1 bits (62), Expect = 1.8
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Frame = -1
Query: 346 DPPTKRLPCTLTPHVRSPPRSEPG*GRGATASTLQ---PDGAAHPKDAQPTEPSRRIEGS 176
D +K P + P + S P++ P R A +S+ P +A P + PS+ G
Sbjct: 979 DFKSKEPPASRIPVLSSKPQASPTTDRRAASSSSNHSTPVNSAPPTPTKNATPSKGTPGQ 1038
Query: 175 ETSA--VSGRQPVGPPRRCRWCPGIPRWTRTRLPGRD 71
TS V+G G P PG P T GRD
Sbjct: 1039 STSGTPVNGTPCKGTPLNS--TPGTPSQLST---GRD 1070
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -1
Query: 238 DGAAHPKDAQPTEPSRRIEGSETSAVSGRQPVGPPRRCR 122
DG P QPT+ I+ T + P GPP C+
Sbjct: 70 DGITSPNHTQPTQVLPTIQPPPTHPYRQQGPAGPPVTCQ 108
>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 232 AAHPKDAQPTEPSRRIEGSETSAVSGRQPVGPPRRCRWCPGIPRWTRTRLPGRDAIHRR 56
A HP + P+E I+ + TSA G P P G P TR + G ++ R+
Sbjct: 973 AGHPNEVVPSEQKMGIQSTGTSA--GTTPRTPSLTRNQTGGAPSLTRKQTGGAASLTRK 1029
>SB_369| Best HMM Match : Pox_A32 (HMM E-Value=0.2)
Length = 856
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 86 PGSGPAGYSGTPAAPSGRPD 145
PG G G+SG PAAP+ P+
Sbjct: 332 PGGGGGGHSGAPAAPAIGPE 351
>SB_37336| Best HMM Match : Peptidase_S7 (HMM E-Value=2.7)
Length = 481
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 6 RATSNLARCRGVNRATGRRCIASRPGSLVLVQRGIPGHQRHRLGGP 143
++ L+ C +NR T A PG + R PGH+R RL P
Sbjct: 261 QSLKRLSICWPLNRETFE---ALEPGGFIESDRSAPGHRRGRLSEP 303
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 28.3 bits (60), Expect = 3.2
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 250 TLQPDGAAHPKDAQPTEPSRRIEGSETSAVSGRQPVGPPRRCRWCPG---IPRWTRT 89
++Q DGA P QP R+I S A G Q P R PG +P W RT
Sbjct: 622 SVQRDGARQPSSTQPAGQKRQI--SAPMASGGAQASKAPMRP--APGKIELPDWPRT 674
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 28.3 bits (60), Expect = 3.2
Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 4/145 (2%)
Frame = -3
Query: 455 RGPNLLRDPRAKGARGVCETQRSAWCCEQTAGPRI---LGPTH*TTPLHSYTPRPIASEV 285
R NLL A A G RS+ A P + LG T P S+TPR S
Sbjct: 282 RRANLLEALTAAAA-GTPAASRSSSSSISLASPGMRSSLGSLQRTPP--SFTPRSSISRR 338
Query: 284 RTRMR*GGYRVNTTTRRRGSPQGRPADGAFEANRRL*N-VGRLGTAARRAAQTVPLVSRN 108
R+ T RRR + R + + RR + +GR+ T + + V L+
Sbjct: 339 RSD--------TPTKRRRMHREHRSGERVLLSRRRPASAMGRITTKKKTPPRRVNLLEAF 390
Query: 107 TPLDQNQAAGSGRDTPSTGRSIHST 33
T AGS R + S+ S+ ST
Sbjct: 391 TAAAAGTPAGSRRSSSSSRSSLPST 415
>SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 98 PAGYSGTPAAPSGRPDGL 151
P G+SG PAAP+ PD L
Sbjct: 264 PGGHSGAPAAPAIGPDSL 281
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -1
Query: 382 GVVSRPRAQGF*DPPTKRLPCTLTPHVRSPPRSEPG*G--RGATASTLQPDGAAHPKDAQ 209
G++SR A P +R+P T+TP + P S G + P + D Q
Sbjct: 352 GIISRRSAFRPWSPVGQRIPPTITPFDKLPVPSPNGVAFLPSGSGRIFSPTAVTYQSDCQ 411
Query: 208 PTEPSRRIEGS 176
+P+ +GS
Sbjct: 412 CNDPACEHKGS 422
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Frame = -1
Query: 370 RPRAQGF*DPPTKRLPCTLTPHVRSPPRSEPG*GRGATASTLQPDGA--AHPKDAQPTEP 197
+P+ G PPT P PP S G + S P +P P P
Sbjct: 946 QPQPPGIMQPPTSIPPSQPMAPPSFPPSSMGGFPPSSQPSMYNPGQVQPGYPGAMTPGAP 1005
Query: 196 SRRIEGSETSAVSGRQPVGPP 134
S + SG P GPP
Sbjct: 1006 SPGVPSPTGLPPSGPPPTGPP 1026
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -1
Query: 343 PPTKRLPCTLTPHVRSPPRSEPG*GRGATASTLQPDGAAHPKDAQPTEPSRRIEGSETSA 164
P +P + TP R+PP S + S+ QP A P + P ++++ ++A
Sbjct: 204 PTGHGIPPSSTPQARAPPHSSTQPLSSHSGSSPQPGSAFSPVNTPPNAQAQQMTPPSSAA 263
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = -1
Query: 331 RLPCTLTPHVRSPPRSEPG*GRGATASTLQPDGAAHPKDA-QPTEPSRRIEGSETSAVSG 155
R P +P P RS P R +S P GA P+D +P + G
Sbjct: 481 RSPGYYSPLRDKPARSSPLAFREQPSSASTPSGARPPRDTDRPFTTVAMPTPPLENTGEG 540
Query: 154 RQPVGPPR 131
R P+ PPR
Sbjct: 541 RSPLPPPR 548
>SB_18258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +3
Query: 171 VSEPSIRLEGSVGWASLG*AAPSGCSVD----AVAPLPHPGSDLGGDRTWGVRVQGSRLV 338
V P I +GSV W S+G + S + D A+ G LG W V +G ++
Sbjct: 215 VRGPDINDDGSVWWVSVGERSASAGARDGPRGAIVANHRGGRALGAQDRWVVSQKGGQIA 274
Query: 339 GGS 347
G+
Sbjct: 275 VGA 277
>SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 253 STLQPDGAAHPKDAQPTEPSRRIEGSETSAVSGRQP 146
S +P AHP+ + PTEP++R+ A S R+P
Sbjct: 57 SDTEPTHRAHPQ-SPPTEPTQRLPRDGHPAPSKRRP 91
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Frame = +2
Query: 95 GPAGYSGTPAAPSGRPD----GLPSRDGRR 172
GP G G P P R D GLP DG R
Sbjct: 915 GPRGRDGLPGEPGARGDIGSRGLPGEDGPR 944
>SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 768
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 47 SDRSTVYRVPTRQPGSGPAGYSGTPAAPSGRPDGLPSRDG 166
+D S + T+ G+GP+G G G PSR G
Sbjct: 41 ADASVAVDLGTQDEGAGPSGVQGDDTIRPALDGGKPSRGG 80
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -2
Query: 309 PTSDRLRGQNPDEVGGLPRQHYNQTARLTPR----TPSRRS 199
P S R R Q+P V PR+ ++PR TP+R S
Sbjct: 368 PVSQRQRSQSPQRVQASPRRRSQSPDHVSPRRKSQTPNRAS 408
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 329 TPLHSYTPRPIASEVRTRMR*GGYRVNTTTRRRGSPQGR 213
TP S+TP+ S R+ G R++ RR GS QGR
Sbjct: 346 TP-QSFTPQSSISRRRSDTPKGRRRISVPRRRAGSAQGR 383
>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 27.5 bits (58), Expect = 5.6
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Frame = -1
Query: 373 SRPRAQGF*DPPTKRLPCTLTPHVRSPPRSEPG*GRGATASTLQ-PDGAAH-PKD----- 215
++P+ G P + T S P PG G+ T T Q P G +H P+D
Sbjct: 673 TKPKPSGPSHKPGDQATTLGTKAQSSGPSHNPG-GQATTLETKQQPWGPSHNPRDQATTL 731
Query: 214 ---AQPTEPSRRIEGSETSAVSGRQPVGP 137
+QP+ PS+ I T+ + +P GP
Sbjct: 732 GTKSQPSGPSQNIGDQATTLGTKPKPSGP 760
>SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 591
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 98 PAGYSGTPAAPSGRPDGLPS 157
P G+SGTPAAP+ P+ S
Sbjct: 332 PGGHSGTPAAPAVGPESFYS 351
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 86 PGSGPAGYSGTPAAPSGRPD 145
PG G G SG PAAP+ P+
Sbjct: 516 PGGGGGGGSGAPAAPAVSPE 535
>SB_24570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 98 PAGYSGTPAAPSGRPDGL 151
P G+SG PAAP+ P+ L
Sbjct: 210 PGGHSGAPAAPAVNPESL 227
>SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 591
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 98 PAGYSGTPAAPSGRPDGLPS 157
P G+SGTPAAP+ P+ S
Sbjct: 332 PGGHSGTPAAPAVGPESFYS 351
>SB_23100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.5 bits (58), Expect = 5.6
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 60 RCIASRPGS-LVLVQRGIPGHQRHRLGGPTGCRPETADVSEPSIRLEGSVGWASLG*AAP 236
R S PG+ +V ++ G+PG+ RL G P DV +RLEGS+ ++ P
Sbjct: 3 RLEGSLPGNNMVRLEGGLPGNNMVRLKGGL---PRN-DV----VRLEGSLPGNNMVKLGP 54
Query: 237 SGCSVDAVAPLPHPG 281
SV+ AP H G
Sbjct: 55 VLLSVNTYAPHTHQG 69
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 74 PTRQPGSGPAGYSGTPAAPSGRPDG 148
P P + P SG P +P+G P G
Sbjct: 707 PPPPPSTPPVQQSGAPGSPAGSPSG 731
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 95 GPAGYSGTPAAPSGRPDGLPSRDGRR 172
G G G P +P P G P +DGRR
Sbjct: 150 GQRGRRGNPGSPG--PKGTPGKDGRR 173
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 27.1 bits (57), Expect = 7.5
Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Frame = -1
Query: 373 SRPRAQGF*DPPTKRLPCTLTPHVRS--PPRSEPG*GRGATASTLQPDGAAHPKDAQPTE 200
SR G PP R P RS PP PG G + P G++ P A P
Sbjct: 187 SRTSTNGPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPG 246
Query: 199 PSRRIEGSETSAVSGRQPVGPPR 131
+R G P PP+
Sbjct: 247 ENRPPPPMRGPTSGGEPP--PPK 267
>SB_34755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 449 PNLLRDPRAKGARGVCETQRSAWCCE-QTAGP 357
PN + A+G RG+C+ C E +TA P
Sbjct: 61 PNTIGCSSARGPRGICDVNPLVQCAEPKTASP 92
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = -1
Query: 340 PTKRLPCTLTPHVRSPPRSEPG*GRGATA---STLQPDGAAHPKDAQPTEP 197
P PCT PH PP ++P + T +T P H T+P
Sbjct: 126 PHTTKPCTTKPHTTKPPTTKPQTTKPHTTKPRTTKPPTTKPHTTKPHTTKP 176
>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 62 VYRVPTRQPGSGPAGYSGTPAAPSGRPDG 148
V VP +P P G G P P GRP G
Sbjct: 277 VLLVPIGRPIGRPIGLIGRPIGPIGRPIG 305
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 27.1 bits (57), Expect = 7.5
Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Frame = -1
Query: 373 SRPRAQGF*DPPTKRLPCTLTPHVRS--PPRSEPG*GRGATASTLQPDGAAHPKDAQPTE 200
SR G PP R P RS PP PG G + P G++ P A P
Sbjct: 99 SRTSTNGPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPG 158
Query: 199 PSRRIEGSETSAVSGRQPVGPPR 131
+R G P PP+
Sbjct: 159 ENRPPPPMRGPTSGGEPP--PPK 179
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -1
Query: 340 PTKRLPCTLTPHVRSPPRSEPG*GRGA-TASTLQPDGAAHPKDAQPTEPSRRIEGS 176
P +P T TPH PP P + + T + ++P P+ PS I+ S
Sbjct: 279 PHTSIPPTPTPHTSIPPTPHPTYKHPSYSYPTYKHPSYSYPSYKHPSYPSSHIQAS 334
>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 86 PGSGPAGYSGTPAAPSGRPD 145
PGS P G+SG PAAP+ P+
Sbjct: 322 PGS-PGGHSGAPAAPAIGPE 340
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 26.6 bits (56), Expect = 9.9
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Frame = -3
Query: 455 RGPNLLRDPRAKGARGVCETQRSAWCCEQTAGPRI-LGPTH*TTPLHSYTPRPIASEVRT 279
R NLL A A ++ S+ + G R LG T P S+TPR S R+
Sbjct: 570 RRANLLEALTAAAAGTPAASRSSSSVSLASPGMRSSLGSLQLTPP--SFTPRSSISRRRS 627
Query: 278 RMR*GGYRVNTTTRRRGSPQGRPADGAFEANRRL*N-VGRLGTAARRAAQTVPLVSRNTP 102
T RRR + R + + RR + +GR+ T + + V L+ T
Sbjct: 628 D--------TPTKRRRMHREHRSGERVLLSRRRPASAMGRITTKKKTPPRRVNLLEAFTA 679
Query: 101 LDQNQAAGSGRDTPSTGRS 45
AGS R + S+ RS
Sbjct: 680 AAAGTPAGSRRRSSSSSRS 698
>SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 2352
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 92 SGPAGYSGTPAAPSGRPD 145
S P G+SG PAAP+ P+
Sbjct: 1621 SSPGGHSGAPAAPAVGPE 1638
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 370 RPRAQGF*DPPTKRLPCTLTPHVRSPPRSEPG*GRGATASTLQP--DGAAHPKDAQ 209
+PR+ G+ DP K T RS ++P + +T +P DG PKD +
Sbjct: 253 KPRSDGWTDPKDKEFVSMATDKPRSDGWTDPKDKEFVSMATDKPRSDGWTDPKDKE 308
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 370 RPRAQGF*DPPTKRLPCTLTPHVRSPPRSEPG*GRGATASTLQP--DGAAHPKDAQ 209
+PR+ G+ DP K T RS ++P + +T +P DG PKD +
Sbjct: 295 KPRSDGWTDPKDKEFVSMATDKPRSDGWTDPKDKEFVSMATDKPRSDGWTDPKDKE 350
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 370 RPRAQGF*DPPTKRLPCTLTPHVRSPPRSEPG*GRGATASTLQP--DGAAHPKDAQ 209
+PR+ G+ DP K T RS ++P + +T +P DG PKD +
Sbjct: 337 KPRSDGWTDPKDKEFVSMATDKPRSDGWTDPKDKEFVSMATDKPRSDGWTDPKDKE 392
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 319 TLTPHVRSPPRSEPG*GRGATASTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSG 155
T+ + + PR G + PDG+ PKD P E ++GS A++G
Sbjct: 917 TINTNQSTLPREPVNEGYDNPTFSDYPDGSPSPKDVSP-ESGVSLDGSNGPALNG 970
>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1910
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 83 QPGSGPAGYSGTPAAPSGRPD 145
+P G G+SG PAAP+ P+
Sbjct: 1088 RPSLGGGGHSGAPAAPAVSPE 1108
>SB_37920| Best HMM Match : DUF755 (HMM E-Value=2.3)
Length = 193
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 220 KDAQPTEPSRRIEGSETSAVSGRQPVGPPRRCRWCPGIPRWTRTR 86
K+ +P +P R ++ S V ++ P R+ R PR TRTR
Sbjct: 84 KEIKP-KPKRTLKRSAELTVVKKEATSPVRKTRATATAPRATRTR 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,099,195
Number of Sequences: 59808
Number of extensions: 409189
Number of successful extensions: 1629
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -