Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1043
(460 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 32 0.23
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 31 0.30
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 31 0.40
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 31 0.40
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 31 0.40
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 31 0.40
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 31 0.40
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 30 0.70
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 30 0.70
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 30 0.70
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 30 0.70
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe... 30 0.93
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 30 0.93
Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 29 1.6
L23648-9|AAK95877.1| 466|Caenorhabditis elegans Prion-like-(q/n... 29 1.6
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 29 1.6
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 29 2.1
AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen prot... 29 2.1
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 29 2.1
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 2.1
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical pr... 28 2.8
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 28 2.8
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 28 2.8
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 28 2.8
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 28 2.8
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z22181-12|CAA80188.1| 161|Caenorhabditis elegans Hypothetical p... 28 3.8
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 28 3.8
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 28 3.8
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 3.8
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 3.8
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 3.8
AY324109-1|AAP85302.1| 161|Caenorhabditis elegans LIN-52 protein. 28 3.8
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein. 28 3.8
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 28 3.8
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno... 28 3.8
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 27 5.0
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 27 5.0
M25478-1|AAA27992.1| 168|Caenorhabditis elegans collagen protein. 27 5.0
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 27 6.6
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 6.6
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 27 6.6
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 27 6.6
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 27 6.6
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 27 6.6
AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen pro... 27 6.6
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 27 6.6
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 27 6.6
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 8.7
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 8.7
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 27 8.7
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 8.7
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 8.7
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 8.7
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 27 8.7
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 31.9 bits (69), Expect = 0.23
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 92 SGPAGYSGTPAAPSGRPDGLPSRDG 166
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.9 bits (69), Expect = 0.23
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = -1
Query: 343 PPTKRLPCTLTPHVRSPPRSEPG*GRGATASTLQPDGAAHPKDAQPTE-PSRRIEGSETS 167
P + P T+ P P P G + QP G P P+E P +E SE
Sbjct: 84 PSNEPSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPSVEPSEDH 143
Query: 166 AVSGRQPVGP 137
SG GP
Sbjct: 144 QPSGPPSPGP 153
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 74 PTRQPG-SGPAGYSGTPAAPSGRPDGLPSRDGRR 172
P+ +P S P G G P P+ RP G P RR
Sbjct: 234 PSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRR 267
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 31.5 bits (68), Expect = 0.30
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Frame = +2
Query: 83 QPG----SGPAGYSGTPAAP--SGRPDGLPSRDGRR 172
QPG +GPAG +G P AP G+P G P +DG+R
Sbjct: 164 QPGPAGPAGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 86 PG-SGPAGYSGTPAAPSGR-PDGLPSRDGRRFR 178
PG +GP G +GTP P + DG P ++GRR R
Sbjct: 170 PGVAGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 56 STVYRVPTRQPGSGPAGYSGTPAAPSGRPDGLPSRDG 166
ST +P GP G G P AP P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 83 QPGSGPAGYSGTPAAPSGRP-DGLPSRDG 166
QP + PAG G P AP + DG P + G
Sbjct: 86 QPSNCPAGPPGPPGAPGDQGLDGAPGQPG 114
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 86 PGS-GPAGYSGTPAAPSG-RPDGLPSRDG 166
PG GP+G SG PA P PDG P R G
Sbjct: 122 PGERGPSGDSGLPALPGAPGPDGAPGRPG 150
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 86 PGS-GPAGYSGTPAAPSG-RPDGLPSRDG 166
PG GP+G SG PA P PDG P R G
Sbjct: 122 PGERGPSGDSGLPALPGAPGPDGAPGRPG 150
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 31.1 bits (67), Expect = 0.40
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Frame = +2
Query: 83 QPG----SGPAGYSGTPAAP--SGRPDGLPSRDGRR 172
QPG +GPAG +G P AP G+P G P +DG R
Sbjct: 164 QPGPAGPAGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 86 PG-SGPAGYSGTPAAPSGRP-DGLPSRDGRRFRAFD 187
PG GP GY G P P R DG P +G A+D
Sbjct: 140 PGPQGPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 30.3 bits (65), Expect = 0.70
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Frame = -1
Query: 343 PPTKRLPCTLTPHVRSPPRSEPG*GRGATAS--TLQPDGAAHPK-DAQPTEPSRRIEGSE 173
P T + T P PPR+EP T ++P PK + PTEP + E +
Sbjct: 356 PTTTTVTTTTVPPKTDPPRTEPPKTEPPTTEPPKIEPPRTEPPKTEPPPTEPP-KTEPPK 414
Query: 172 TSAVSGRQPVGPPRRCRWC 116
T+ P P +C
Sbjct: 415 TTPPKTEPPTTEPPNIPYC 433
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +2
Query: 71 VPTRQPGSGPAGYSGTPAAPSGR----PDGLPSRDG 166
VP +Q SG GY G P P + DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +2
Query: 71 VPTRQPGSGPAGYSGTPAAP--SGRPD--GLPSRDGRRFRAFDS 190
VP + G GY G P AP +G P GLP G++ R+ D+
Sbjct: 1096 VPGLEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDN 1139
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +2
Query: 71 VPTRQPGSGPAGYSGTPAAPSGR----PDGLPSRDG 166
VP +Q SG GY G P P + DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +2
Query: 71 VPTRQPGSGPAGYSGTPAAP--SGRPD--GLPSRDGRRFRAFDS 190
VP + G GY G P AP +G P GLP G++ R+ D+
Sbjct: 1353 VPGLEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDN 1396
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +2
Query: 71 VPTRQPGSGPAGYSGTPAAPSGR----PDGLPSRDG 166
VP +Q SG GY G P P + DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 86 PGS-GPAGYSGTPAAPSGRPDGLPSRDG 166
PG GP GY GTP P DGLP G
Sbjct: 753 PGPVGPDGYPGTPGEPG--MDGLPGFPG 778
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 59 TVYRVPTRQPGSGPAGYSGTPAAPSGRPDGLPSRDG 166
T + P + GP G +G P PDG P RDG
Sbjct: 822 TGFGFPGQDGYPGPNGDAGAAGLPG--PDGYPGRDG 855
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +2
Query: 71 VPTRQPGSGPAGYSGTPAAP--SGRPD--GLPSRDGRRFRAFDS 190
VP + G GY G P AP +G P GLP G++ R+ D+
Sbjct: 1352 VPGLEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDN 1395
>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defective
protein 45 protein.
Length = 1076
Score = 29.9 bits (64), Expect = 0.93
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Frame = -1
Query: 430 PAQKGRAGYVRLNGLHGVVSRPRAQGF*DPPTKRLPCTLTPHVRSPPRSEPG*GRGATAS 251
PA K G G+ VVS P+ D P+ P + P PP G G
Sbjct: 959 PASKADTGDKWERGVKPVVSPPKT----DAPSVSEPKSEGPKRFVPPHLRNRQGGGGAGG 1014
Query: 250 TLQPDGAAHPKDAQPTEPSRRIEGSETSAVSGRQPV----GPPRR 128
+ + A ++ T P R +G +GR + GPP R
Sbjct: 1015 SEEQSAPARSGNSNVTSPPDRAQGLRGPPPTGRNSLPRRDGPPPR 1059
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 29.9 bits (64), Expect = 0.93
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 95 GPAGYSGTPAAPSGRP--DGLPSRDGRR 172
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical
protein M195.3 protein.
Length = 687
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 158 GTAARRAAQTVPLVSRNTPLDQNQAAGSGRDTPSTGRSIHSTA 30
GT A + + ++ TPL + + R+ PSTGR STA
Sbjct: 529 GTGAPKRSNGPAFNNQITPLAVSSTVSTARNGPSTGRRTESTA 571
>L23648-9|AAK95877.1| 466|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 38
protein.
Length = 466
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +2
Query: 71 VPTRQPGSGPAGYSGTPAAPSGRPDGLPSRDGRRFRAFDSP 193
+P P S P GY P G P G+P F SP
Sbjct: 82 MPGMPPSSHPYGYPPMHGMPPGMPQGMPPMMDPNMPDFSSP 122
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +2
Query: 83 QPGS----GPAGYSGTPAAPSGRPDGLPSRDGR 169
QPG+ GPAG +G P AP G P G P DG+
Sbjct: 184 QPGAAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = +2
Query: 83 QPGSGPA-GYSGT--PAAPSGRPDGLPSRDGR 169
QPGSG A G +G PA P+G+P G P +DG+
Sbjct: 223 QPGSGNAPGPAGPPGPAGPNGQP-GHPGQDGQ 253
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = +2
Query: 83 QPGSGPA-GYSGT--PAAPSGRPDGLPSRDGR 169
QPGSG A G +G PA P+G+P G P +DG+
Sbjct: 223 QPGSGNAPGPAGPPGPAGPNGQP-GHPGQDGQ 253
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 83 QPGS-GPAGYSGTPAAPSGRPD--GLPSRDG 166
QPG GP G +G P AP G+P G P +DG
Sbjct: 268 QPGGPGPQGDAGAPGAP-GQPGQAGAPGQDG 297
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 83 QPGS-GPAGYSGTPAAPSGRPD--GLPSRDG 166
QPG GP G +G P AP G+P G P +DG
Sbjct: 264 QPGGPGPQGDAGAPGAP-GQPGQAGAPGQDG 293
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = +2
Query: 95 GPAGYSGTPAAPS--GRP--DGLPSRDGR 169
GPAG SG P P GRP GLP GR
Sbjct: 113 GPAGPSGAPGKPGRPGRPGAGGLPGNPGR 141
>AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen protein
107, isoform a protein.
Length = 256
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 83 QPGSGPAGYSGTPAAPSGRP--DGLPSRDGR 169
QP + PAG +G P AP G P DG P + G+
Sbjct: 85 QPNNCPAGPAGPPGAP-GAPGEDGTPGQAGK 114
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 83 QPGSGPAGYSGTPAAPSGRP--DGLPSRDGR 169
QP + PAG +G P AP G P DG P + G+
Sbjct: 85 QPNNCPAGPAGPPGAP-GAPGEDGTPGQAGK 114
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 28.7 bits (61), Expect = 2.1
Identities = 34/118 (28%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Frame = -1
Query: 343 PPTKRLPCTLTPHVRSPPRSE-----PG-*GRGATASTLQPDGAAHP--KDAQPTEPSRR 188
P + PCT P + PP PG GR P G + P QP +P +R
Sbjct: 134 PVPPQCPCTAAPGLGGPPGPPGQDGIPGNPGRNGEDGAPGPQGPSGPPGPPGQPGQPGQR 193
Query: 187 IEGSETSAV--SGRQPVGP--PRRCRWCPGIPRWTRTRLPGRDAIHRRPVALFTPRQR 26
E A+ G P GP P PG P + PG+D + P QR
Sbjct: 194 GPPGEPGALLPGGDAPPGPSGPPGRPGAPGQP--GKAGSPGQDGSNGDAGVAGEPGQR 249
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 74 PTRQPGSGPAGYSGTPAAPSGRPDGLPSRDGR 169
P + G+G G +G P AP G G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248
>Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical
protein M195.1 protein.
Length = 304
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 89 GSGPAGYSGTPAAPSGRP--DGLPSRDGR 169
GSGPAG GTP GR DG P DG+
Sbjct: 113 GSGPAGPPGTP-GEDGRDGNDGQPGPDGQ 140
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 28.3 bits (60), Expect = 2.8
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Frame = -1
Query: 304 VRSPPRSEPG*GRGATASTLQPDGAAHPKDAQPTEPSRR------------IEGSETSAV 161
V+ P P G ++S+ QP + P+ QPT PSR I+ S V
Sbjct: 8 VKQPLPDSPPTDEGMSSSSAQPSAPSAPEQ-QPTSPSRPPPPAGFVYPSTDIQNSSEVHV 66
Query: 160 SGRQPVGPP 134
S P GPP
Sbjct: 67 SAPVPAGPP 75
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 329 SFSGWVLKSLGPRSAHNTMQTVESHIPRAPLLRG 430
S++GW S+ P+SA++ M +E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 329 SFSGWVLKSLGPRSAHNTMQTVESHIPRAPLLRG 430
S++GW S+ P+SA++ M +E + R L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 329 SFSGWVLKSLGPRSAHNTMQTVESHIPRAPLLRG 430
S++GW S+ P+SA++ M +E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 86 PGSGPAGYSGTPAAPSGRPDGLPSRDGR 169
PG+ P+G + P P G P G P DG+
Sbjct: 192 PGNTPSGGAAGPPGPPGPPGG-PGNDGQ 218
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +2
Query: 86 PG-SGPAGYSGTPAAPS--GRPDGLPS 157
PG +GPAG +G P AP G P PS
Sbjct: 171 PGPAGPAGNAGPPGAPGGPGAPGNTPS 197
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +2
Query: 83 QPGS-GPAGYSGTPAAPSGRPD--GLPSRDG 166
QPG GP G +G P AP G P G P +DG
Sbjct: 267 QPGGPGPQGDAGAPGAP-GAPGQAGAPGQDG 296
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +2
Query: 83 QPGS-GPAGYSGTPAAPSGRPD--GLPSRDG 166
QPG GP G +G P AP G P G P +DG
Sbjct: 267 QPGGPGPQGDAGAPGAP-GAPGQAGAPGQDG 296
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 74 PTRQPG-SGPAGYSGTPAAPSGRPDGLPSRDG 166
P PG +GPAG G P AP G + S G
Sbjct: 184 PAGPPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 74 PTRQPGS-GPAGYSGTPAAPSG-RPDGLPSRDG 166
P PG GP G G+PA PSG P G P G
Sbjct: 160 PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAG 192
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 86 PGSGPAGYSGT-PAAPSGRPDGLPSRDGR 169
P PAG SG PA P G P G P DG+
Sbjct: 187 PAGSPAGPSGPGPAGPPG-PAGPPGNDGQ 214
>Z22181-12|CAA80188.1| 161|Caenorhabditis elegans Hypothetical
protein ZK632.13 protein.
Length = 161
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 268 RGATASTLQPDGAAHPKDAQPTEPSRRIE 182
RG + L+P G+A P+ QPT P E
Sbjct: 127 RGKLLNVLKPTGSASPRYLQPTPPKNVAE 155
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +2
Query: 83 QPGS-GPAGYSGTPAAPSGRPD--GLPSRDG 166
QPG GP G +G P AP G P G P +DG
Sbjct: 267 QPGGPGPQGDAGAPGAP-GAPGQAGAPGQDG 296
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +2
Query: 83 QPGS-GPAGYSGTPAAPSGRPD--GLPSRDG 166
QPG GP G +G P AP G P G P +DG
Sbjct: 267 QPGGPGPQGDAGAPGAP-GAPGQAGAPGQDG 296
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 74 PTRQPG-SGPAGYSGTPAAPSGRPDGLPSRDG 166
P PG +GPAG G P AP G + S G
Sbjct: 184 PAGPPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 74 PTRQPGS-GPAGYSGTPAAPSG-RPDGLPSRDG 166
P PG GP G G+PA PSG P G P G
Sbjct: 160 PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAG 192
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 74 PTRQPG-SGPAGYSGTPAAPSGRPDGLPSRDG 166
P PG +GPAG G P AP G + S G
Sbjct: 184 PAGPPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 74 PTRQPGS-GPAGYSGTPAAPSG-RPDGLPSRDG 166
P PG GP G G+PA PSG P G P G
Sbjct: 160 PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAG 192
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 74 PTRQPG-SGPAGYSGTPAAPSGRPDGLPSRDG 166
P PG +GPAG G P AP G + S G
Sbjct: 184 PAGPPGPAGPAGNDGAPGAPGGPGEPGASEQG 215
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 74 PTRQPGS-GPAGYSGTPAAPSG-RPDGLPSRDG 166
P PG GP G G+PA PSG P G P G
Sbjct: 160 PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAG 192
>AY324109-1|AAP85302.1| 161|Caenorhabditis elegans LIN-52 protein.
Length = 161
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 268 RGATASTLQPDGAAHPKDAQPTEPSRRIE 182
RG + L+P G+A P+ QPT P E
Sbjct: 127 RGKLLNVLKPTGSASPRYLQPTPPKNVAE 155
>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
Length = 1040
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 290 EVRTRMR*GGYRVNTTTRRRGSPQ 219
++R+RM+ GGY + TT RRG P+
Sbjct: 144 DIRSRMQ-GGYNSDYTTYRRGPPE 166
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 86 PGS-GPAGYSGTPAAPSGRP--DGLPSRDGRRFR 178
PG GPAG +G+P P G P G P R G+R R
Sbjct: 169 PGPRGPAGDAGSPGQP-GHPGSPGNPGRGGQRSR 201
>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
abnormal morphology protein19 protein.
Length = 1040
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 290 EVRTRMR*GGYRVNTTTRRRGSPQ 219
++R+RM+ GGY + TT RRG P+
Sbjct: 144 DIRSRMQ-GGYNSDYTTYRRGPPE 166
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 74 PTRQPGSGPAGYSGTPAAPSGRPDGLPSRDGRRF 175
P P S GYS AAP+G P++ RF
Sbjct: 207 PAPAPASDAGGYSSGAAAPAGGGGSYPAKKIMRF 240
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 95 GPAGYSGTPAAPSGRPDGLPSRDGRR 172
GP G SG P P G P RDG+R
Sbjct: 224 GPKGDSGPPGQKG--PSGYPGRDGQR 247
>M25478-1|AAA27992.1| 168|Caenorhabditis elegans collagen protein.
Length = 168
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 83 QPG-SGPAGYSGTPAAPSGR-PDGLPSRDG 166
QPG GP G G PA P G+ P G P G
Sbjct: 136 QPGPKGPNGNPGAPAQPGGQGPPGPPGPAG 165
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 83 QPGSGPAGYSGTPAAPSGRP--DGLPSRDG 166
QP + PAG +G P P G+P DG P + G
Sbjct: 87 QPSNCPAGPAGPPGEP-GQPGDDGAPGKAG 115
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 92 SGPAGYSGTPAAPSGR-PDGLPSRDG 166
+GPAG SG P P R DG P G
Sbjct: 177 AGPAGPSGQPGTPGQRGNDGFPGAPG 202
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 92 SGPAGYSGTPAAPSGR-PDGLPSRDG 166
+GPAG SG P P R DG P G
Sbjct: 161 AGPAGPSGQPGTPGQRGNDGFPGAPG 186
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 92 SGPAGYSGTPAAPSGRPDGLPSRDG 166
+GP G +G+PAAPS P G P G
Sbjct: 171 AGPDGEAGSPAAPS--PPGPPGPSG 193
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +2
Query: 86 PG-SGPAGYSGTPAAPSGRP--DGLPSRDG 166
PG +GPAG G P AP G+P DG P G
Sbjct: 218 PGPAGPAGPQGQPGAP-GQPGHDGQPGAPG 246
>Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical
protein E03G2.4 protein.
Length = 333
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 89 GSGPAGYSGTPAAPSGRP--DGLPSRDG 166
G G G +P P GRP DG P DG
Sbjct: 135 GGGCCGCGQSPPGPPGRPGSDGSPGSDG 162
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +2
Query: 86 PG-SGPAGYSGTPAAPSGRP--DGLPSRDG 166
PG +GPAG G P AP G+P DG P G
Sbjct: 218 PGPAGPAGPQGPPGAP-GQPGHDGQPGAPG 246
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +2
Query: 86 PG-SGPAGYSGTPAAPSGRP--DGLPSRDG 166
PG +GPAG G P AP G+P DG P G
Sbjct: 218 PGPAGPAGPQGPPGAP-GQPGHDGQPGAPG 246
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 98 PAGYSGTPAAPSGRPDGLPSRDG 166
PAG++ P AP G P G P G
Sbjct: 745 PAGFAPPPGAPYGYPPGAPPPAG 767
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +3
Query: 120 QRHR--LGGPTGCRPETADVSEPSIRLE 197
QRHR GP G RP T + P RLE
Sbjct: 288 QRHRNMRSGPNGPRPTTTSFNGPFFRLE 315
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +2
Query: 86 PG-SGPAGYSGTPAAPSGRP--DGLPSRDG 166
PG +GPAG G P AP G+P DG P G
Sbjct: 218 PGPAGPAGPQGPPGAP-GQPGHDGQPGAPG 246
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +2
Query: 86 PG-SGPAGYSGTPAAPSGRP--DGLPSRDG 166
PG +GPAG G P AP G+P DG P G
Sbjct: 218 PGPAGPAGPQGPPGAP-GQPGHDGQPGAPG 246
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -1
Query: 292 PRSEPG*GRGATASTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSGRQPVG 140
P +E G G GA + PD AA +A P E + EG A G +P G
Sbjct: 342 PAAE-GAGGGAEPAGAAPDAAAAAPEAAPAEAAPAAEG----AGGGAEPAG 387
>AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen
protein 116 protein.
Length = 313
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 86 PGSGPAGYSGTPAAPSGRPDGLPSRDG 166
PG GP S P P G P G P R G
Sbjct: 180 PGDGPTPGSPGPPGPPG-PPGYPGRQG 205
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 68 RVPTRQPGSGPAGYSGTPAAPSGRPDGLPSRDG 166
+ P +GP G G P +P +G P DG
Sbjct: 222 KTPGPVGAAGPPGPPGPPGSPGENTEGAPGLDG 254
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 86 PGS-GPAGYSGTPAAPSGRPDGLPSRDGR 169
PG+ GPAG +G+P P G P G P R G+
Sbjct: 220 PGAPGPAGDAGSPGQP-GAP-GQPGRPGK 246
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = +2
Query: 95 GPAGYSGTPAAPS--GRPD--GLPSRDGR 169
GPAG GTP P G+P GLP GR
Sbjct: 101 GPAGPVGTPGKPGRPGKPGVAGLPGNPGR 129
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 83 QPG-SGPAGYSGTPAAPSGRPDGLPSRD 163
QPG GP G +G P AP DG P +D
Sbjct: 180 QPGPKGPPGVNGQPGAPG--QDGNPGQD 205
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 92 SGPAGYSGTPAAPSGRPDGLPSRDG 166
+GP G +G+PAAPS P G P G
Sbjct: 172 AGPDGEAGSPAAPS--PPGPPGPPG 194
>Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical
protein C01H6.1 protein.
Length = 307
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 74 PTRQPGS-GPAGYSGTPAAPSGRPDGLPSRDGRR 172
P PG GP G SG+P P R G+P D +
Sbjct: 101 PVCPPGPPGPPGNSGSPGNPGSR--GVPGEDNHQ 132
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Frame = +2
Query: 86 PGS-GPAGYSGTPAAP-------SGRPDGLPSRDG 166
PG+ G AG+ GTP P G GLP RDG
Sbjct: 1385 PGAKGEAGFPGTPGVPGYAGEKGDGGLPGLPGRDG 1419
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Frame = +2
Query: 86 PGS-GPAGYSGTPAAP-------SGRPDGLPSRDG 166
PG+ G AG+ GTP P G GLP RDG
Sbjct: 1384 PGAKGEAGFPGTPGVPGYAGEKGDGGLPGLPGRDG 1418
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 77 TRQPGS-GPAGYSGTPAAPSG 136
T QPGS GP G G P AP G
Sbjct: 436 TPQPGSLGPMGSLGPPTAPPG 456
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Frame = +2
Query: 86 PGS-GPAGYSGTPAAP-------SGRPDGLPSRDG 166
PG+ G AG+ GTP P G GLP RDG
Sbjct: 1384 PGAKGEAGFPGTPGVPGYAGEKGDGGLPGLPGRDG 1418
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Frame = +2
Query: 86 PGS-GPAGYSGTPAAP-------SGRPDGLPSRDG 166
PG+ G AG+ GTP P G GLP RDG
Sbjct: 1385 PGAKGEAGFPGTPGVPGYAGEKGDGGLPGLPGRDG 1419
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Frame = +2
Query: 86 PGS-GPAGYSGTPAAP-------SGRPDGLPSRDG 166
PG+ G AG+ GTP P G GLP RDG
Sbjct: 1421 PGAKGEAGFPGTPGVPGYAGEKGDGGLPGLPGRDG 1455
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 65 YRVPTRQPGSGPAGYSGTPAAPSGRPDGLPSRDG 166
Y P +GP G G P AP PDG P G
Sbjct: 197 YAEPGPAGPAGPPGPDGQPGAPG--PDGQPGAGG 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,824,862
Number of Sequences: 27780
Number of extensions: 282851
Number of successful extensions: 1405
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -