Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1043
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.39 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   3.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   4.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 139 PPRRCRWCPGIPRWTRTRLPGRDAIHRRPVALFTPR 32
           PPR     PG PR   T+L      ++RP   F PR
Sbjct: 138 PPRE----PGTPRINFTKLKRHHPRYKRPRTTFEPR 169


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 74   PTRQPGSGPAGYSG 115
            P+RQ GSG  G+ G
Sbjct: 1923 PSRQTGSGHGGHGG 1936


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 151 QPVGPPRRCRWCP 113
           +PV PPRR   CP
Sbjct: 336 EPVEPPRRKNNCP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -3

Query: 383 WCCEQTAGP 357
           WCC+   GP
Sbjct: 14  WCCDNLGGP 22


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 95  GPAGYSGTPAAPSGRPDGLPSRDGRRFRAFD 187
           G  GY+G P   SG  + L     R+   F+
Sbjct: 420 GIGGYNGLPTVMSGLDESLSDVTPRKKYPFE 450


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 117 VPEYPAGPEPGCRVGTRY 64
           VP +  G     RVGTRY
Sbjct: 352 VPNWVMGNHDRVRVGTRY 369


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -3

Query: 164 RLGTAARRAAQTVPLVSRNTPLDQNQAAGSGRDTPS 57
           + G+       TV      T L    A G+G  TPS
Sbjct: 207 KAGSTDASTPATVTTTGATTTLPAASATGTGPATPS 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,354
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)