Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1043
(460 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 33 0.12
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 30 0.86
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 29 2.0
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-... 29 2.0
At3g59010.1 68416.m06577 pectinesterase family protein contains ... 29 2.0
At2g45910.1 68415.m05709 protein kinase family protein / U-box d... 29 2.0
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ... 29 2.0
At2g18470.1 68415.m02151 protein kinase family protein contains ... 28 2.6
At2g30110.1 68415.m03664 ubiquitin activating enzyme 1 (UBA1) E1... 27 4.6
At1g11480.1 68414.m01319 eukaryotic translation initiation facto... 27 4.6
At5g04540.1 68418.m00454 expressed protein 27 6.1
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa... 27 8.1
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa... 27 8.1
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa... 27 8.1
At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone... 27 8.1
At2g27390.1 68415.m03306 proline-rich family protein contains pr... 27 8.1
At2g19710.1 68415.m02303 expressed protein contains Pfam profi... 27 8.1
At2g01850.1 68415.m00118 xyloglucan:xyloglucosyl transferase / x... 27 8.1
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 32.7 bits (71), Expect = 0.12
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -1
Query: 331 RLPCTL-TPHVRSPPRSEPG*GRGATASTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSG 155
R+P T +PH +P S PG S P GA PK + P P+ GS T
Sbjct: 132 RIPSTAQSPHAAAPGSSTPG-------SMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGA 184
Query: 154 RQP 146
P
Sbjct: 185 HSP 187
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
SP|P14714 Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 29.9 bits (64), Expect = 0.86
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 341 WVLKSLGPRSAHNTMQTVESHIPRAPLLRGDLVGGSALY 457
WVLKS G + T +ES P A +L + G +A+Y
Sbjct: 465 WVLKSHGGNTGFTTESLMESGYPDASVLGESICGMAAVY 503
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = -1
Query: 220 KDAQPTEPSRRIEGSETSAVSGRQPV 143
++++PTE S++I+ + ++ VS R+PV
Sbjct: 488 EESEPTETSKKIQPTSSAMVSSRKPV 513
>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 971
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = -1
Query: 220 KDAQPTEPSRRIEGSETSAVSGRQPV 143
++++PTE S++I+ + ++ VS R+PV
Sbjct: 511 EESEPTETSKKIQPTSSAMVSSRKPV 536
>At3g59010.1 68416.m06577 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 529
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 134 QTVPLVSRNTPLDQNQAAGSGRDTP--STGRSIHS 36
Q+ LVSR DQN GR P +TG SIH+
Sbjct: 387 QSCNLVSRKGSSDQNYVTAQGRSDPNQNTGISIHN 421
>At2g45910.1 68415.m05709 protein kinase family protein / U-box
domain-containing protein contains Pfam profiles PF00069
Eukaryotic protein kinase domain, PF04564: U-box
domain; supported by tandem duplication of (GI:3386604)
(TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
Length = 834
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 433 IPAQKGRAGYVRLNGLHGVVSRPRAQGF*DPPTKRL 326
IPA RAG +R +G+ SR G D P RL
Sbjct: 7 IPAMGERAGSMRFHGIGSPGSRSSRSGIMDEPVSRL 42
>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
(PGS1) identical to phosphatidylglycerolphosphate
synthase GI:13365519 from [Arabidopsis thaliana]
Length = 296
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -3
Query: 173 NVGRLGTAARRAAQTVPLVSRNTPLDQNQAAGSGRDTPSTGRSIHSTA 30
N+G+ TA + A T+ L SR++ + A+G+G S G S+ S A
Sbjct: 237 NLGKWKTATQMTALTILLASRDSNVGWLVASGAGLLYVSAGLSVWSLA 284
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 343 PPTKRLPCTLTPHVRSPPRSEPG*GRGATASTLQPDGAAHPKDAQPTEPS 194
PP+ T +P SPP P +G ++S+ PD + P P P+
Sbjct: 19 PPSNTNSTTSSPPAPSPPSPTP--PQGDSSSSPPPDSTSPPAPQAPNPPN 66
>At2g30110.1 68415.m03664 ubiquitin activating enzyme 1 (UBA1) E1;
identical to GB:U80808
Length = 1080
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 109 IPRWTRTRLPGRDAIHRRPVALFTPRQRARLL 14
IP WT+ +A+ R V F PRQ A+++
Sbjct: 805 IPEWTKNPKEAAEAVDRVIVPDFEPRQDAKIV 836
>At1g11480.1 68414.m01319 eukaryotic translation initiation
factor-related contains weak similarity to
Swiss-Prot:P23588 eukaryotic translation initiation
factor 4B (eIF-4B) [Homo sapiens]
Length = 578
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 72 SRPGSLVLVQRGIPGHQRHRLGGPT 146
+RP LVL +RGI + H+L PT
Sbjct: 400 ARPRELVLKERGIDEPEHHKLDQPT 424
>At5g04540.1 68418.m00454 expressed protein
Length = 833
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 312 HPTSDRLRGQNPDEVGGLPRQHYNQTARLTPRTPSRRS 199
HP SDR+ N E G + +AR P +P R+S
Sbjct: 481 HPFSDRVGMPNVSESGNFELPIQSSSARSFPSSPVRQS 518
>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -1
Query: 271 GRGATASTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSGRQPVGP 137
G G+ S QP ++HP+ P+ S+ S + GP
Sbjct: 208 GEGSHQSNTQPPTSSHPRQVSPSASDSNSRPLNQSSPSEQDRAGP 252
>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -1
Query: 271 GRGATASTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSGRQPVGP 137
G G+ S QP ++HP+ P+ S+ S + GP
Sbjct: 208 GEGSHQSNTQPPTSSHPRQVSPSASDSNSRPLNQSSPSEQDRAGP 252
>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -1
Query: 271 GRGATASTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSGRQPVGP 137
G G+ S QP ++HP+ P+ S+ S + GP
Sbjct: 208 GEGSHQSNTQPPTSSHPRQVSPSASDSNSRPLNQSSPSEQDRAGP 252
>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1017
Score = 26.6 bits (56), Expect = 8.1
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 143 RAAQTVPLVSRNTPLDQNQA-AGSGRDTPSTGRSIHSTAAR*IAGSAP 3
RA +V ++ L+Q + A R PS RS HST R A SAP
Sbjct: 5 RAGSSVTKLAVRRILNQGASYATRTRSIPSQTRSFHSTICRPKAQSAP 52
>At2g27390.1 68415.m03306 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 352 F*DPPTKRLPCTLTPHVRSPPRSEP 278
F PP RLP L P PPR P
Sbjct: 80 FPPPPLPRLPPPLLPPPEEPPREPP 104
>At2g19710.1 68415.m02303 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 937
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 346 PKILGPAVCSQHHADR*VSHTPRAPFARGSR 438
P I PA + HH H+P +A G R
Sbjct: 222 PNIHAPATVNAHHGSSERHHSPENSYANGGR 252
>At2g01850.1 68415.m00118 xyloglucan:xyloglucosyl transferase /
xyloglucan endotransglycosylase / endo-xyloglucan
transferase (EXGT-A3) identical to endoxyloglucan
transferase [Arabidopsis thaliana] GI:5533313
Length = 333
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 327 SPALLHPT-SDRLRGQNPDEVGGLPRQHYN 241
S +++P + RLR +P GG+PR+H N
Sbjct: 288 SECVVNPAEAQRLRVYDPVRFGGIPRRHRN 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,990
Number of Sequences: 28952
Number of extensions: 258754
Number of successful extensions: 879
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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