Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1038
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    28   0.59 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   7.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   9.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   9.6  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    24   9.6  

>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 28.3 bits (60), Expect = 0.59
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 79  LSLPSTDCLCIFYHNAGIY 23
           L + +TDC C+FY+N GIY
Sbjct: 128 LDMLNTDC-CVFYNNHGIY 145


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 10   MDTEDIFRHYDRKYIDNQWREVK 78
            ++T+D+ RH   KYID+   E++
Sbjct: 1393 LETKDLLRHVVLKYIDHTNPEIR 1415


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 297 FKTFNSLLFK*VIYPVHVQFWSNASVRNLTEFICF 193
           FK FN +  +   YP     W +  +RN TE++ F
Sbjct: 562 FKIFNFIREQ---YPALKSGWKSVKLRNWTEYVHF 593


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 133  CFVNIYFVLIDCHNGVF*LSLPS 65
            CFV+IY V+++C   +   S P+
Sbjct: 1733 CFVDIYSVILECFLAIQPRSFPA 1755


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 203 NSVKLRTLAFDQN*TCTGYITHLNNNELNVLKKIEFCFL 319
           N   LR ++   N   TGY   ++NNEL+   K E+ FL
Sbjct: 400 NLDSLRDMSTQINKHYTGYFIPVSNNELST--KDEYLFL 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,954
Number of Sequences: 5004
Number of extensions: 35082
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)