Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1038
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0262 + 42378465-42378634,42379100-42379230,42379307-423794...    28   4.1  
01_05_0502 + 22771428-22771466,22772327-22772430,22773043-227731...    27   5.4  
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197...    27   7.2  

>01_07_0262 +
           42378465-42378634,42379100-42379230,42379307-42379466,
           42379547-42379850,42379936-42380037,42380583-42380606
          Length = 296

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 31  RHYDRKYIDNQWREVKVKRLHYGNL*VQNRY 123
           R+ +R+ I+  W E++V  L++GN+ ++N Y
Sbjct: 53  RYINRQIIEG-WEELRVNGLYHGNICLENVY 82


>01_05_0502 +
           22771428-22771466,22772327-22772430,22773043-22773129,
           22773212-22773287,22773393-22773467,22773639-22773692,
           22773745-22773918,22774002-22774061,22774135-22774251,
           22774448-22774542,22774811-22775013,22775177-22775274,
           22775451-22775587,22776154-22776219,22776300-22776465,
           22776537-22776659,22776763-22776845,22776943-22777084,
           22777334-22777363,22777587-22777657,22777742-22778333
          Length = 863

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 187 TNEANKLSQITYTCIRPKLNVHRI 258
           T++A  +   TY C+RP L  HR+
Sbjct: 370 TSDAENVLPTTYGCLRPPLGKHRL 393


>11_04_0166 + 14317129-14317962,14318042-14318809,14319008-14319740,
            14353399-14353892,14353971-14354417,14354505-14355110,
            14355204-14355391,14355470-14355640,14355723-14355810
          Length = 1442

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 161  FLLPNNYNVMFCKYLFCTYRL 99
            FL P NY V+  KYLF  YRL
Sbjct: 1324 FLGPTNYIVVDFKYLFDLYRL 1344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,177,348
Number of Sequences: 37544
Number of extensions: 166735
Number of successful extensions: 286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)