Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1038
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11030| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-16)                 28   3.2  
SB_43654| Best HMM Match : zf-AD (HMM E-Value=0.2)                     27   7.4  
SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)                27   9.7  

>SB_11030| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-16)
          Length = 304

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -3

Query: 278 YYSSELYILCTFNFGRMQVYVI*LSLFASFVKSVKLH*KFL 156
           +++ E+YI C    G +  Y++ L+ + +   +V+ H +FL
Sbjct: 137 HFAHEIYIYCILAVGILLPYLLILAAYIAIFHTVRRHARFL 177


>SB_43654| Best HMM Match : zf-AD (HMM E-Value=0.2)
          Length = 284

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 332 CWL*LRNKIQFFLRHLIHYYSSELYILCTFNFGRMQVYVI 213
           C L L  + + FL   I Y+SS    +C  +FGR++++ +
Sbjct: 52  CVLALEERNKRFLEARILYWSSLGREICVHSFGRLRIFEV 91


>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
          Length = 337

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 54  RQSVEGSES*KTPLWQSISTK 116
           R S+  S++ KTPLW +I+TK
Sbjct: 7   RVSIIESQAFKTPLWDNIATK 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,503,391
Number of Sequences: 59808
Number of extensions: 218504
Number of successful extensions: 351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)