Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1038
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   2.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   4.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   8.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.4  

>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 404 LIILSSYPISDIKG*RSLRINLRQCWL 324
           L + S   ISDIK   S+++  R+ WL
Sbjct: 65  LFVRSIATISDIKMEYSVQLTFREQWL 91


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 240 FWSNASVRNLTE 205
           FW N  ++NLTE
Sbjct: 11  FWKNWDLKNLTE 22


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -1

Query: 436 CNHIGEFIICN*LFYLPTPLVILKVDVH*ELIYANVG 326
           CN +   ++C  L  +  P   ++ D   +L+  N G
Sbjct: 362 CNIVATHLVCGILGSILVPFFYVQEDDDVKLVLLNFG 398


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 417 SLYVINYFIFL 385
           S  +INYFIFL
Sbjct: 15  SFILINYFIFL 25


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 73  LPSTDCLCIFYHNAGI 26
           L S  C   F HNAGI
Sbjct: 161 LKSITCALQFCHNAGI 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,200
Number of Sequences: 438
Number of extensions: 2525
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)