Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1036
         (502 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     29   0.018
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.6  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   8.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.2  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 0.018
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 129 CAHCPLSSRETCRASCINESANARGEAVCVLGALPLPRSLTRALGRSAAASGISSLKGGN 308
           C  CP ++++  R  CI    N R   + V   +P P S+   LG       ++ L   +
Sbjct: 73  CYDCPYNTQDCYREDCIPGDGNKR-SIIVVNRKMPGP-SVEVCLGDEVIIDVVNHLSSDS 130

Query: 309 TVIH 320
           T IH
Sbjct: 131 TTIH 134


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 272 CGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGT 382
           C  R QLT RR +  P        R C    +  PGT
Sbjct: 590 CRPREQLTWRRNFHGPHRLAARSRRCCYHAVA--PGT 624


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 272 CGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGT 382
           C  R QLT RR +  P        R C    +  PGT
Sbjct: 482 CRPREQLTWRRNFHGPHRLAARSRRCCYHAVA--PGT 516


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 193 TRGERRFAYWAL 228
           +RGERRF++ AL
Sbjct: 99  SRGERRFSHKAL 110


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 193 TRGERRFAYWAL 228
           +RGERRF++ AL
Sbjct: 259 SRGERRFSHKAL 270


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 193 TRGERRFAYWAL 228
           +RGERRF++ AL
Sbjct: 259 SRGERRFSHKAL 270


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 147 SSRETCRASCINESANARGEAVCVLGALPLPRSLTR 254
           S+  T  +S  +   N+    + +   +PLPR L R
Sbjct: 427 SNTNTSTSSTNSNKPNSSDLNMLIKETMPLPRKLVR 462


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,023
Number of Sequences: 336
Number of extensions: 2307
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)