Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1036
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203... 31 0.52
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 29 2.8
02_01_0037 + 261405-261779,261880-262065,262185-262271,262341-26... 29 2.8
12_01_0874 + 8384332-8384657,8385447-8386044 28 3.7
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 3.7
02_03_0264 + 17059279-17059638,17060226-17060260,17060307-170603... 28 3.7
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 3.7
07_03_0300 - 16401011-16401435,16401692-16401743 28 4.8
02_05_0504 - 29590852-29591862 28 4.8
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271... 27 6.4
06_03_0801 + 24714725-24715501 27 6.4
05_06_0084 - 25435650-25436600 27 6.4
10_08_0035 - 14321699-14321751,14321800-14321914,14322136-143221... 27 8.5
04_03_0506 + 16635334-16635520,16635639-16635856 27 8.5
>06_01_0275 +
2029542-2029689,2029777-2030295,2030657-2030754,
2031718-2032028,2032560-2032631,2032729-2033398
Length = 605
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 304 PPLSELIPLAAAERPSARVSERGSGRAPNTQTASP 200
P L +IPL A + + R S+ G G+ P+ Q +P
Sbjct: 404 PELLNIIPLETAVQETGRSSDEGKGKQPDIQIRNP 438
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 274 AAERPSARVSERGSGRAPNTQTASP 200
A E P +R+ +R APNTQ A P
Sbjct: 1945 AREEPGSRIPDRSGRIAPNTQFAGP 1969
>02_01_0037 +
261405-261779,261880-262065,262185-262271,262341-262420,
262518-262599,262794-262814,263204-263249,263365-263483,
263685-263798,263885-263959,264068-264157,264604-264713,
264902-265160
Length = 547
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 191 GRFINAAGTTG-FPTGKRAVSATQLM*VSSLIRHPRLYTLCFRLVCCVE 48
G I A G G +P GK+ VSA QL S +RH + L +LV V+
Sbjct: 146 GHMITAVGGHGGYPGGKQFVSADQLRDKLSYLRHEK--ALIIKLVDIVD 192
>12_01_0874 + 8384332-8384657,8385447-8386044
Length = 307
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 191 QRAGRGGLRIGRSSASSLTDSRA 259
+RA RGG+ IG +A+S DSRA
Sbjct: 221 RRAARGGVGIGSRAATSAGDSRA 243
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 28.3 bits (60), Expect = 3.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 201 PARWPIH*CSWHDRFPDWKAG 139
P +W +H WH P W++G
Sbjct: 900 PDQWGLHIVIWHGASPSWRSG 920
>02_03_0264 +
17059279-17059638,17060226-17060260,17060307-17060385,
17060580-17061123,17061328-17061404
Length = 364
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 316 ITVLPPLSELIPLAAAERPSARVSERGSGRAPNTQTASPRALADSL-MQLARQVSRLESG 140
+T +PP +LIP R + RV TQ PR + +L +L V R+ G
Sbjct: 30 LTTVPPAGDLIPAMRLRRAATRVLRPAYS---TTQAGGPRTSSSNLSSELVMYVLRMHGG 86
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 194 RAGRGGLRIGRSSASSLTDSRARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKR 373
R+ R G RS + S +D +RS R+ ++ R +++ T+ R + S+
Sbjct: 587 RSRRSGRGRSRSRSRSDSDRYSRSPKRSRRHSRSRTRSRSRSRSRSYTRNRRASRSRSRS 646
Query: 374 PGTVKRPRCWRXSIGSA 424
PG +R GSA
Sbjct: 647 PGASRRHERSATGSGSA 663
>07_03_0300 - 16401011-16401435,16401692-16401743
Length = 158
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 236 KRKSAQYANRLSPRVGRFINAAGTTGFPTGKR 141
+R ++ + RL P VGR + G+ G TGKR
Sbjct: 101 RRLTSLSSGRLDPSVGRLASLIGSCGGLTGKR 132
>02_05_0504 - 29590852-29591862
Length = 336
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 174 CINESANARGEAVCVL-GALPLPRSLTRALGRSAAASGISSLKG 302
C+ E A RG VCVL G + R G S S +++L+G
Sbjct: 142 CVAEYARRRGRGVCVLSGGGAVVNVALRQPGASPPGSMVATLRG 185
>11_06_0713 +
26524984-26525276,26526008-26526434,26526550-26527171,
26528059-26528099,26528181-26528249,26528565-26528665,
26529300-26529378,26529955-26530053,26530129-26530197,
26530326-26530375,26530482-26530548,26531031-26531125,
26534469-26534856
Length = 799
Score = 27.5 bits (58), Expect = 6.4
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = -1
Query: 250 VSERGSGRAPNTQTASPR--AL--ADSLMQLARQVSRLESGQ*AQRN*CELAHSLGTPGF 83
V ERG R P T A R AL A + +R + R+ R+ + HSLG
Sbjct: 28 VPERGGARRPPTLPAQQRRTALPQAAAAAPSSRLLQRVGRAGLPDRHYVRILHSLGQAVH 87
Query: 82 TLYASGSYVVWN 47
+ G + WN
Sbjct: 88 VISLDGKLMYWN 99
>06_03_0801 + 24714725-24715501
Length = 258
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 168 ASCINESANARGEAVCVLGA 227
A+C+ E A RG VC++GA
Sbjct: 91 AACVAEYARRRGRGVCLMGA 110
>05_06_0084 - 25435650-25436600
Length = 316
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 307 LPPLSELIPLAAAERPSARVSERGSGRAPNTQTAS 203
LPPL LIP + A P+++ E + A T S
Sbjct: 142 LPPLGHLIPFSLAGSPASQPPENAAAAAAGGATPS 176
>10_08_0035 -
14321699-14321751,14321800-14321914,14322136-14322199,
14322221-14322238,14323433-14323524,14323580-14323601,
14324345-14324424,14324882-14325082
Length = 214
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 310 VLPPLSELIPLAAAERPSARVSERGSGRAPNTQTASPRALADSLMQLA 167
+LPPL L PL+ RP + R G++ + P AL M L+
Sbjct: 25 LLPPLFWLFPLSPLSRPMVMPARR--GKSGGDVSVLPAALVHQFMLLS 70
>04_03_0506 + 16635334-16635520,16635639-16635856
Length = 134
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +1
Query: 1 IMVIAVSCVKLLSAHNSTQHTSRKHKV*SLGCLMSELTHI----NCVALTARFPVGKP 162
++V+A VK LS + KH+ + + +E T + CV L ARF V KP
Sbjct: 32 VVVLATVDVKQLSGLKFLEAARMKHQDLQVIMMSAETTRLYTMMRCVKLAARFLVKKP 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,097
Number of Sequences: 37544
Number of extensions: 306961
Number of successful extensions: 1091
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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