Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1036
         (502 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13410-1|CAA31776.1|   34|Homo sapiens T-cell receptor beta-chai...    31   2.3  
AY686878-1|AAW67359.1|  132|Homo sapiens random intestinal-homin...    29   6.9  
AK128020-1|BAC87234.1|  595|Homo sapiens ursor.  protein.              29   9.1  

>X13410-1|CAA31776.1|   34|Homo sapiens T-cell receptor beta-chain
          protein.
          Length = 34

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 41 ADNNFTQETAMTM 3
          ADNNFTQETAMTM
Sbjct: 1  ADNNFTQETAMTM 13


>AY686878-1|AAW67359.1|  132|Homo sapiens random intestinal-homing
           antibody heavy chain variable region protein.
          Length = 132

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 481 LSGFATSDLSVDFCDARQGGGAYGXTPATRPFYGSWPFAGLLLTCS 344
           LS    +D +V +C ARQ GG    + A  P+Y  +   G L+T S
Sbjct: 87  LSSVTAADTAVYYC-ARQIGGRIADSSAPTPYYFDYWGQGTLVTVS 131


>AK128020-1|BAC87234.1|  595|Homo sapiens ursor.  protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 159 TCRASCINESANARGEAVCVLGALP----LPRSLTRALGRSA 272
           TCRA  +NE  +A  E    +G  P    LPR +T  LGRSA
Sbjct: 27  TCRA--VNELGDASAEIQLAVGHAPQLTELPRDVTVELGRSA 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,802,827
Number of Sequences: 237096
Number of extensions: 1658112
Number of successful extensions: 4904
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4904
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)