Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1036
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +2

Query: 188 GQRAGRGGLRIGRSSASSLTDSRA 259
           G+R GRGG R G SS+SS ++SR+
Sbjct: 174 GRRGGRGG-RSGSSSSSSSSESRS 196


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 132 AHCPLSSRETCRASCINESANARGEAVC 215
           A C  +  +TCR+SC N  + +  +A C
Sbjct: 161 AKCMSTCSDTCRSSCSNRVSQSTCDATC 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,361,399
Number of Sequences: 27780
Number of extensions: 218707
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)