Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1036
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   1.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.2  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 347 TCEQKASKRPGTVKRPR--CWRXSIGSAPLTSITKIDAQVRSGETRQDYKDTR 499
           T      +R   V +PR   WR +I S           ++  G + +D+K TR
Sbjct: 382 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTR 434


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 347 TCEQKASKRPGTVKRPR--CWRXSIGSAPLTSITKIDAQVRSGETRQDYKDTR 499
           T      +R   V +PR   WR +I S           ++  G + +D+K TR
Sbjct: 297 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTR 349


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 347 TCEQKASKRPGTVKRPR--CWRXSIGSAPLTSITKIDAQVRSGETRQDYKDTR 499
           T      +R   V +PR   WR +I S           ++  G + +D+K TR
Sbjct: 616 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTR 668


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 279 SGISSLKGGNTVIHRIR 329
           +G+  + G NTVIH+ R
Sbjct: 128 TGVDDILGNNTVIHQPR 144


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 334 YPLILWITVLPPLSELIPLAAAERPSARVS 245
           YP   W TV P    LI       PS R++
Sbjct: 131 YPSPEWDTVTPEAKNLINQMLTVNPSKRIT 160


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 146 FQSGNLSCQLH**IGQRAGRG 208
           F  GNL CQ+   IG   G G
Sbjct: 113 FALGNLGCQIFAVIGSLTGIG 133


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 328 LILWITVLPPLSELIPLAA 272
           L+L   +LPP S ++PL A
Sbjct: 279 LLLVSKILPPTSLVLPLIA 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,035
Number of Sequences: 438
Number of extensions: 2794
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)