Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1036
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04490.1 68417.m00651 protein kinase family protein contains ... 30 1.0
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 30 1.0
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb... 29 2.3
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 29 2.3
At3g47450.2 68416.m05160 expressed protein 27 7.1
At3g47450.1 68416.m05159 expressed protein 27 7.1
At1g77030.1 68414.m08970 glycine-rich protein 27 7.1
At1g71960.1 68414.m08318 ABC transporter family protein similar ... 27 7.1
At5g25170.1 68418.m02984 expressed protein 27 9.4
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3... 27 9.4
At2g46320.3 68415.m05763 mitochondrial substrate carrier family ... 27 9.4
At2g46320.2 68415.m05762 mitochondrial substrate carrier family ... 27 9.4
At2g46320.1 68415.m05761 mitochondrial substrate carrier family ... 27 9.4
>At4g04490.1 68417.m00651 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 658
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 377 GTVKRPRC---WRXSIGSAPLTSITKIDAQVRSGETRQDYK 490
GTV RP C W + ++ ++ A RS +TRQDY+
Sbjct: 230 GTVARPSCYFRWDDYRFAGAFDNLERVPAPPRSPQTRQDYR 270
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = -1
Query: 472 FATSDLSVDFCDARQGGGAYGXTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLS 293
F S S+D+ YG A P YGS P G+ + YP + + P++
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPVT 197
Query: 292 ELIPL 278
PL
Sbjct: 198 GYAPL 202
>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
(RbohA) / NADPH oxidase identical to respiratory burst
oxidase protein A from Arabidopsis thaliana [gi:3242781]
Length = 902
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 421 RPPDEHHKNRRSSQKW 468
RPPDEH NR S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -1
Query: 472 FATSDLSVDFCDARQGG-GAYGXTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPL 296
F S S+D+ Q YG A P YGS P G+ + YP + + P+
Sbjct: 138 FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPV 197
Query: 295 SELIPL 278
+ PL
Sbjct: 198 TGYAPL 203
>At3g47450.2 68416.m05160 expressed protein
Length = 561
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 191 GRFINAAGTTG-FPTGKRAVSATQLM*VSSLIRHPRLYTLCFRLVCCVE 48
G I A G G +P GK+ VSA +L S +RH + L +LV V+
Sbjct: 154 GHMITAVGGNGGYPGGKQFVSADELREKLSHLRHEK--ALIVKLVDIVD 200
>At3g47450.1 68416.m05159 expressed protein
Length = 561
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 191 GRFINAAGTTG-FPTGKRAVSATQLM*VSSLIRHPRLYTLCFRLVCCVE 48
G I A G G +P GK+ VSA +L S +RH + L +LV V+
Sbjct: 154 GHMITAVGGNGGYPGGKQFVSADELREKLSHLRHEK--ALIVKLVDIVD 200
>At1g77030.1 68414.m08970 glycine-rich protein
Length = 349
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 188 GQRAGRGGLRIGRSSASSLTDSRARSFGCGER 283
G R GRGG R GR + +R FG G R
Sbjct: 205 GGRGGRGGARGGRGGGARGGRGGSRDFGGGGR 236
>At1g71960.1 68414.m08318 ABC transporter family protein similar to
breast cancer resistance protein GB:AAC97367 from [Homo
sapiens]
Length = 662
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 204 EAVCVLGALPLPRSLTRALGRSAAASGISSL---KGGNTVI 317
E + + L LPRSLTR + AA S IS L K NTV+
Sbjct: 159 ETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVV 199
>At5g25170.1 68418.m02984 expressed protein
Length = 218
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 136 TARFPVGKPVVPAALMNRPTRGERR 210
++RFP G + + +NR RGERR
Sbjct: 182 SSRFPPGPSLSSSGSLNRSRRGERR 206
>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
- Arabidopsis thaliana, EMBL:AC009755
Length = 927
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 478 SGFATSDLSVDFCDARQGGGAYGXTPATRPFYGSWPFAGLLL 353
S F+++D+S Q G + G P P GS + GL++
Sbjct: 102 SSFSSADISTTASQFEQPGLSNGENPVREPTNGSPRWGGLMM 143
>At2g46320.3 68415.m05763 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 262
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 233 RKSAQYANRLSPRVGRFINAAGTTGFPTGKRAVSAT 126
R+S Q A PR G I A GF G A +AT
Sbjct: 152 RRSIQSAMGEEPRAGSIIGANFAAGFVAGAVAAAAT 187
>At2g46320.2 68415.m05762 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 262
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 233 RKSAQYANRLSPRVGRFINAAGTTGFPTGKRAVSAT 126
R+S Q A PR G I A GF G A +AT
Sbjct: 152 RRSIQSAMGEEPRAGSIIGANFAAGFVAGAVAAAAT 187
>At2g46320.1 68415.m05761 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 361
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 233 RKSAQYANRLSPRVGRFINAAGTTGFPTGKRAVSAT 126
R+S Q A PR G I A GF G A +AT
Sbjct: 251 RRSIQSAMGEEPRAGSIIGANFAAGFVAGAVAAAAT 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,882,709
Number of Sequences: 28952
Number of extensions: 211731
Number of successful extensions: 536
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -