Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1035
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    75   6e-15
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    32   0.057
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    30   0.23 
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    30   0.31 
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    27   2.8  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    26   3.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   3.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   3.8  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    25   6.6  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    25   6.6  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    25   6.6  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    25   8.7  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  

>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 75.4 bits (177), Expect = 6e-15
 Identities = 40/80 (50%), Positives = 52/80 (65%)
 Frame = -1

Query: 248 LVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMRSTEPSNHVRL 69
           LV NV   Q + LK+ + L+ IGYIC+ +  EVL+ +SN ILTA++ G R  EP   VRL
Sbjct: 134 LVANVGEGQPSALKQHS-LQTIGYICESVSPEVLSAQSNAILTAVVAGARKEEPDAAVRL 192

Query: 68  AATQALLNSLEFFRANFEKK 9
           AA  AL +SLEF R NF  +
Sbjct: 193 AALGALYDSLEFVRENFNNE 212



 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = -2

Query: 484 RMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIG-TENSRPSSAAQC 308
           RMAAGL LKN +T+++   K +YQQ W +L  +++  +K   L  +G +E+    SAAQ 
Sbjct: 54  RMAAGLALKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQL 113

Query: 307 VAYVAVAELPVGQWNDLI 254
           VA +A  EL   QW DL+
Sbjct: 114 VAAIAAYELATNQWPDLM 131



 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 612 VSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVL 511
           +SPD N    A + L++AA T+F  ++ +L+  L
Sbjct: 11  LSPDANVRLNAEKQLENAARTDFAQYMVLLAQEL 44


>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -2

Query: 469 LQLKNHLTSKDP--TLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYV 296
           LQ+K    ++ P  TL+ ++   W  +  D   ++++ +          P    +C+ Y+
Sbjct: 25  LQIKEQYDAEQPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKDSPERRLECLYYI 84

Query: 295 AVAELPVGQWNDLIQFL*KML 233
           A++   + Q+ +  ++L  +L
Sbjct: 85  ALSHYKLKQYEESRRYLNMLL 105


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 406 WLALAEDVRLYIKENILAAI--GTENSRPSSAAQCVAYVAVAELPVGQWNDLIQFL 245
           W ++  DV+  I+ N+L       E+    +  + +A +A  +LP G+WN+L  FL
Sbjct: 73  WSSVDADVQNQIRSNLLDITLKEPESIVRHAFGRVIAALAKLDLPEGKWNELSAFL 128


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +3

Query: 99  PHAMYDGRKNLITSFC*YFSINILTNVANSLQSRFLFEFSRLDMNNIFYKNWIRSFHCPT 278
           PH   +  +N +  FC + +   ++N   S   + L   S  D+NN+   + +RS     
Sbjct: 256 PHFYLNDSRNSLNYFCPFSAFEDISNSVRSSCGKRLSPSSNFDLNNLGGDDDLRSESSSD 315

Query: 279 GSSATATYATH 311
             SA A+   H
Sbjct: 316 FESAPASILEH 326


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 165 ILTNVANSLQSRFLFEFSRLDMNNIFYKNWIRSFHCPT--GSSATATYATHCAAELGRLF 338
           ++ N      +   FEF  ++  N  Y    R ++     GS+AT T +T+ +   G  +
Sbjct: 479 LIDNKTKQTPTNHTFEFGTIEERNSIYLKKGRKYNVRVEYGSAATYTLSTNLSPSTGGRY 538

Query: 339 SV 344
           S+
Sbjct: 539 SI 540


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = -1

Query: 251 ILVENVVHVQSTELKKEAT--LEAIGYI-CQDIDAEVLTERSNQILTAIIHGMRSTEPSN 81
           + ++ VV  +S  L   A   +E I  I  QD+D E L  + N     I+ G    E  +
Sbjct: 164 VRIDGVVKPRSRFLGNSAASIMEGIASIKLQDLDEEYLITQPNVYARGILFGKMRLELGD 223

Query: 80  HVRLAATQALLNS-LEF 33
           HV +   +  L + +EF
Sbjct: 224 HVTVRCPKTDLQADIEF 240


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/70 (21%), Positives = 30/70 (42%)
 Frame = +2

Query: 371 YIKSNIFCQSQPSLLILLFKCRIFRSEMIFQLQTSCHPSHLTVTTLRRTSDNILMNVVKF 550
           YI  N F  +     +LLF   +F    +F +Q   H +H      +   +  L+  ++ 
Sbjct: 11  YIDINFFRNATLDQCLLLFYLSLFSLTNLFLIQKLFHANHTQHPLKKYFGETCLLEYIQI 70

Query: 551 VVAAWSRYLT 580
           +++  S  L+
Sbjct: 71  ILSIVSAALS 80


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 168 LTNVANSLQSRFLFEFSRLDMNNIFYKNWIRSFHCPTGSSATATYAT 308
           LTN +    S +L   S   ++      +  SFH PT SS T++ +T
Sbjct: 784 LTNSSTLATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSST 830


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 195 SRFLFEFSRLDMNNIFYKNWIRSFHCPTGSSATATYAT 308
           S +L +    ++  +F +NW+     P+G  A   +AT
Sbjct: 47  SAYLLKSQGYNVEGVFMRNWLDEDSAPSGCPAERDWAT 84


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 153 FSINILTNVANSLQSRFLFEFSRLDMNNIFYKNW 254
           F I +L  V   L+ + L + SRL ++ + ++NW
Sbjct: 421 FFIQLLMAVFKLLKPKLLVDDSRLVLSALLFENW 454


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 204 LFEFSRLDMNNIFYKNWIRSFHCPTGSSATATYATHCAAEL 326
           LFEF   D +N+    WI +    T   ++    THC+ +L
Sbjct: 325 LFEFQ--DKHNLLTLGWIHTHPTQTCFMSSVDLHTHCSYQL 363


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 235 LFMSNLLNSKRKRLWR 188
           +F+ N+L  KR++LWR
Sbjct: 239 VFVENVLTKKRRKLWR 254


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 479 HPSHLTVTTLRRTSDNILMNVVKFVVAAWSRYLTAASNSFRSGET 613
           HP+   V    +  +N L +   FVV      L  A N  R G T
Sbjct: 79  HPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLT 123


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 416 STKMAGFGRRCSTLYKRKYISCYRNRE 336
           S K+AG     S  + ++Y++ YR  E
Sbjct: 110 SQKLAGLSHSTSDYFSKEYLTAYRRSE 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,552
Number of Sequences: 5004
Number of extensions: 43686
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)