Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1035
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0648 + 16563147-16565557,16565655-16565850 70 1e-12
12_02_0820 + 23437811-23440230,23440336-23440534 70 2e-12
03_02_0662 - 10250235-10250433,10250692-10253105 67 9e-12
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 35 0.045
08_02_0493 - 17770723-17770758,17770772-17770996,17771051-177720... 33 0.18
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 33 0.24
07_01_0142 + 1054495-1054644,1054767-1055971,1056102-1056180,105... 32 0.31
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 32 0.31
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 31 0.73
08_02_0114 + 12754155-12754370,12754792-12755340,12755410-127555... 28 6.8
06_01_0030 - 296681-296789,296903-297105,297348-297426,297512-29... 27 8.9
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 27 8.9
03_02_0178 + 6195402-6199158,6199438-6200003 27 8.9
02_05_0223 - 26943210-26944623,26944741-26945666 27 8.9
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = -1
Query: 206 KEATLEAIGYICQDIDAEVLTE-RSNQILTAIIHGMRSTEPSNHVRLAATQALLNSLEFF 30
K+ATLEA+GY+C++I E L + + N +LTA++ GM TE S VRLAA +AL N+L+F
Sbjct: 148 KQATLEALGYVCEEISPEHLEQDQVNAVLTAVVQGMNQTELSPEVRLAAVKALYNALDFA 207
Query: 29 RANF 18
+NF
Sbjct: 208 ESNF 211
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = -2
Query: 487 ARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE-NSRPSSAAQ 311
+R AG+ LKN L +KD K+ Q+W++L ++ IKE++L +G+ + +++Q
Sbjct: 53 SRRLAGIILKNSLDAKDSAKKELLIQQWVSLDPSIKQKIKESLLITLGSSVHDARHTSSQ 112
Query: 310 CVAYVAVAELPVGQWNDLI 254
+A VA E+P +W +LI
Sbjct: 113 VIAKVASIEIPRREWQELI 131
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/78 (43%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = -1
Query: 248 LVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTE-RSNQILTAIIHGMRSTEPSNHVR 72
L+ N+ VQ K+ATLE +GY+C+++ E + + + N+ILTA++ GM ++E ++ VR
Sbjct: 136 LLSNIHQVQPNV--KQATLETLGYLCEEVSPEAVDQDQVNKILTAVVQGMNASEGNSDVR 193
Query: 71 LAATQALLNSLEFFRANF 18
LAAT+AL N+L F + NF
Sbjct: 194 LAATRALYNALGFAQVNF 211
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = -2
Query: 487 ARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE-NSRPSSAAQ 311
+R AGL LKN L +K+ K + QRWLAL V+ IK +L + + S S+++Q
Sbjct: 55 SRRLAGLILKNALDAKEQHRKNELFQRWLALDVGVKAQIKGFLLQTLSSPVASARSTSSQ 114
Query: 310 CVAYVAVAELPVGQWNDLIQFL 245
+A VA E+P QW +LI L
Sbjct: 115 VIAKVAGIEIPQKQWPELIASL 136
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 67.3 bits (157), Expect = 9e-12
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = -1
Query: 248 LVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTE-RSNQILTAIIHGMRSTEPSNHVR 72
L+ N+ + K+ATL+ +GY+C++I E L + + N +LTA++ GM E ++ VR
Sbjct: 134 LLTNMTKPDAPPCLKQATLDCLGYVCEEISPEDLEQDQVNAVLTAVVQGMNHVENNSDVR 193
Query: 71 LAATQALLNSLEFFRANFEKK 9
LAA +AL N+L+F NF+ +
Sbjct: 194 LAAVKALYNALDFAETNFQNE 214
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = -2
Query: 511 SQGGNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE-- 338
S N +R AG+ LKN L +K+ T K+++ QRW+ + ++ +KE++L +G+
Sbjct: 45 SNDENPPESRRLAGILLKNSLDAKESTRKEEFVQRWMNVDPAIKSQVKESLLITLGSPVF 104
Query: 337 NSRPSSAAQCVAYVAVAELPVGQWNDLI 254
+R SS +Q +A VA E+P W +LI
Sbjct: 105 EARRSS-SQVIAKVAAIEIPHQGWPELI 131
>04_04_1693 +
35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 35.1 bits (77), Expect = 0.045
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Frame = -2
Query: 556 HHKFHNIHQNVVRCPSQG-GNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVR 380
+ +F + + +V ++G G S AR AAGL LKN+L + ++ QQ
Sbjct: 42 YSQFPDFNNYLVFLLARGEGKSFEARQAAGLLLKNNLRATFSSMPPASQQ---------- 91
Query: 379 LYIKENILAAIGTENSRPSSAAQCVAYVAVAELPVGQWNDLIQFL*KMLFMSNL 218
Y+K +L IG N S V V + V W +L Q L + L ++L
Sbjct: 92 -YVKSELLPCIGATNKAIRSTVGTVISVLFQIVRVAGWIELFQALHQCLDSNDL 144
>08_02_0493 -
17770723-17770758,17770772-17770996,17771051-17772033,
17772196-17772720,17772801-17772990
Length = 652
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = -1
Query: 242 ENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMRSTEP---SNHVR 72
+ +V ++ +LK + LE + + ++T N +L +I+ +RS E S+HVR
Sbjct: 546 DQLVLQRAEKLKADKNLENLQISASIKNLGIITSSPNVVLDDVINDLRSMEENRLSDHVR 605
Query: 71 LAATQALLNSLE 36
L+ T+ N+++
Sbjct: 606 LSTTKGFSNNVD 617
>06_03_1130 -
27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +3
Query: 162 NILTNVANSLQSRFLFEFSRLDMNNIFYKNWIRSFHCPTGSSATATYATHCAAELGRLFS 341
NI+ NV N+L S FL + + +++ + +CP TY ++G +
Sbjct: 66 NIIINVFNNLPSPFLLSWQGIQQRRSSWQDGVYGTNCPIPPGGNFTYIMQFKDQIGSYYY 125
Query: 342 VPIAA 356
P A
Sbjct: 126 FPSLA 130
>07_01_0142 +
1054495-1054644,1054767-1055971,1056102-1056180,
1056619-1056822
Length = 545
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +3
Query: 162 NILTNVANSLQSRFLFEFSRLDMNNIFYKNWIRSFHCPTGSSATATYATHCAAELGRLFS 341
NI+ NV N+L FL ++ + +++ + +CP A TY ++G
Sbjct: 70 NIIVNVFNNLDEPFLLTWNGIKQRKNSWQDGVLGTNCPIPPGANYTYKFQAKDQIGTFVY 129
Query: 342 VPIAA 356
P A
Sbjct: 130 FPSVA 134
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 32.3 bits (70), Expect = 0.31
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Frame = -2
Query: 487 ARMAAGLQLKNHLTSKDPTLKQQ-----YQQRWLALAEDVRLYIKENILAAIGTENSRPS 323
A++ G Q + LT+KD +++ + +++ A+ D + K+N LAA G++N PS
Sbjct: 1267 AKIVPGNQSADPLTAKDQSVRAKSIEGRHERSEAAMKPDAQQ--KKNALAANGSDNQMPS 1324
Query: 322 SAAQ 311
S+AQ
Sbjct: 1325 SSAQ 1328
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = -1
Query: 227 VQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMRSTEPSNHVRLAATQALL 48
+ +T++K L Q+++A V+ R+ +LTAI+H + + S A QA++
Sbjct: 107 IMTTQMKAICNLGVWCISVQELEAVVVDHRATSLLTAIVHAIDNPFCSLSTTFEAVQAIM 166
>08_02_0114 +
12754155-12754370,12754792-12755340,12755410-12755512,
12755552-12756060
Length = 458
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 532 QNVVRCPSQGGNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLAL 395
+NV +GG +++A+ A+ + + T+ Q+Y WL L
Sbjct: 280 ENVKAITMRGGTNEIAKKASSSDSADKEDQPEKTVPQEYCDTWLLL 325
>06_01_0030 -
296681-296789,296903-297105,297348-297426,297512-297877,
298590-298956,299235-299373,299461-299731,299849-299958,
300567-300704
Length = 593
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/62 (22%), Positives = 24/62 (38%)
Frame = +3
Query: 162 NILTNVANSLQSRFLFEFSRLDMNNIFYKNWIRSFHCPTGSSATATYATHCAAELGRLFS 341
N++ NV NSL L + + +++ + CP TY ++G F
Sbjct: 66 NVVVNVLNSLDEPLLITWDGIQQRKNCWQDGVLGTTCPIPPGWNWTYNFQVKDQIGSFFY 125
Query: 342 VP 347
P
Sbjct: 126 FP 127
>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -1
Query: 245 VENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMRSTEPS-NHVRL 69
+ N V S E K+EA L+ + D D + + NQILTA++ + ++ S + L
Sbjct: 1175 ISNGTEVSSLE-KREA-LQQLVKASVDNDISIWAKYFNQILTAVLEVLDDSDSSTREIAL 1232
Query: 68 AATQALLNS 42
+ +LN+
Sbjct: 1233 SLVAEMLNN 1241
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/76 (28%), Positives = 31/76 (40%)
Frame = -2
Query: 538 IHQNVVRCPSQGGNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENI 359
+H+ V PSQG + K S +P Q ++ AL D R ENI
Sbjct: 597 VHEKVATSPSQGAPEMKKNEKGTISSKKMSESFEPDASQHVEE---ALPRDGR----ENI 649
Query: 358 LAAIGTENSRPSSAAQ 311
+A TE +AA+
Sbjct: 650 VALSDTEVPEQEAAAE 665
>02_05_0223 - 26943210-26944623,26944741-26945666
Length = 779
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 457 NHLTSKDPTLKQQYQQR-WLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAV 290
++L+ P ++Q ++R + L E L I+E IL A T + R S A CVA V
Sbjct: 346 HYLSDVRPAAREQERERKCIGLVE---LGIREAILTATRTRDGRGSCDAYCVAKYGV 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,882,303
Number of Sequences: 37544
Number of extensions: 276616
Number of successful extensions: 799
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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