Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1035
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 83 2e-16
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 29 2.3
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_40184| Best HMM Match : PTR2 (HMM E-Value=0) 28 5.2
SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16) 28 5.2
SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0) 28 6.9
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_45980| Best HMM Match : C1_3 (HMM E-Value=4.6) 27 9.1
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 83.0 bits (196), Expect = 2e-16
Identities = 39/67 (58%), Positives = 50/67 (74%)
Frame = -2
Query: 511 SQGGNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENS 332
+ G SQVARMAAGLQLKN LTSKD ++ QYQQRWL L ++VR ++K+ LA +G E +
Sbjct: 45 ADGSKSQVARMAAGLQLKNQLTSKDDIVRAQYQQRWLGLDKEVRDHVKKMSLATLGNETA 104
Query: 331 RPSSAAQ 311
RP+ A Q
Sbjct: 105 RPAIAPQ 111
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = -1
Query: 161 DAEVLTERSNQILTAIIHGMRSTEPSNHVRLAATQALLNSLEFFRANFEK 12
+ E L +N+ILT II GMR EPSNH+RLAAT ALLNSLEF + NFEK
Sbjct: 112 EPEHLVSHANKILTVIIQGMRKEEPSNHIRLAATTALLNSLEFTKQNFEK 161
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -3
Query: 612 VSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVL 511
VSPD EL+AA +YL+ AA N F+ +L + L
Sbjct: 11 VSPDLAELQAAQKYLEEAAQVNLPQFLLVLVNEL 44
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = -2
Query: 499 NSQVARMAAGLQLKNHLTS--KDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRP 326
NS+ AR A LQ+ N+ S +D T+K + A AED+ + I + ++ I +S P
Sbjct: 235 NSENARHA--LQISNYADSLVRDTTIKAVKDVQTYAFAEDLSIDIIGDAMSEIPQTDSVP 292
Query: 325 SSAA 314
SS++
Sbjct: 293 SSSS 296
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 451 LTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENS--RPSSAAQCVAYVAVA 287
L K+ +LK+Q+ QR + VR + ++ GT+ S +P A +A A
Sbjct: 284 LNEKERSLKEQFMQRQDKKSAPVRRVVMPTVIPTQGTQQSGPKPDDPVSTAAAIAAA 340
>SB_40184| Best HMM Match : PTR2 (HMM E-Value=0)
Length = 421
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 520 RCPSQGGNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRW 404
+ P +G A G +KN +KDP++K+ + W
Sbjct: 122 KIPPEGNVVLQVTCAVGCAIKNRFRNKDPSVKKDHWMDW 160
>SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16)
Length = 505
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 371 YIKSNIFCQSQPSLLILLFKCRIFRSEMIFQLQTSCHPSHLTVTTLRR--TSDNILMNVV 544
Y KS I+C+ I R+F++ + + S + V +RR T+D+ +M+++
Sbjct: 192 YHKSRIYCR------IRCIATRVFKTRLFW---FSVPQKQIDVLKMRRRDTTDSTVMDLI 242
Query: 545 KFVVAAW 565
K V+++W
Sbjct: 243 KVVISSW 249
>SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)
Length = 498
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 496 SQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKEN 362
+Q + QL NH+ P L+ + Q LAL ++V+ Y N
Sbjct: 274 TQYLQKVLNQQLTNHIKDTLPALRSKLQDNLLALEKEVKGYENYN 318
>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 27.9 bits (59), Expect = 6.9
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = -2
Query: 511 SQGGNSQVARMA--AGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE 338
S GG+ ++ AGLQ+K T+K + ++ Q A +IL G E
Sbjct: 939 SSGGSGTHGSISQRAGLQMKGDGTTKMGVVCEKKQAHLSTHAHTTAA----SILWRRGFE 994
Query: 337 ---NSRPSSAAQCVAYVAVAELPVGQWNDLIQFL*KMLF 230
NSRPSS AQC+ + P + QF K++F
Sbjct: 995 IIWNSRPSSPAQCLRFAITTNRPTPAKAEKEQFR-KVIF 1032
>SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 872
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -1
Query: 248 LVENVVHVQSTELKKEATLEAIGYICQDIDAEV--LTERSNQILTAIIHGMRSTEPSNHV 75
L EN VHV +K+ T + + ++DA+V + E + L I+ + + N +
Sbjct: 750 LRENQVHVSQELEEKQVTCQQLQSRLDELDADVDKMAEDRQRNLADIVAIQQKAKYYNQL 809
Query: 74 RLAATQALLNSLEFFRANFEKKK 6
+ AL + E A +K++
Sbjct: 810 KEGRYTALCKTPESLEAEMQKQR 832
>SB_45980| Best HMM Match : C1_3 (HMM E-Value=4.6)
Length = 771
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 428 KCRIFRSEMIFQLQTSCHPSHLTVTTLRRTSDNILMNV 541
KC I ++++FQ T HP + L + D+ NV
Sbjct: 280 KCTICGTQLLFQGYTKSHPQCFIIDRLDNSQDHYKWNV 317
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,804,271
Number of Sequences: 59808
Number of extensions: 301543
Number of successful extensions: 844
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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