Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1035
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...    97   9e-21
Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    29   3.5  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      29   3.5  
AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.    29   3.5  

>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 47/81 (58%), Positives = 57/81 (70%)
 Frame = -1

Query: 251 ILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMRSTEPSNHVR 72
           +L  NV   QS E+ KE++LE +GYICQDID  VL  ++N +LTAIIHGMR  E S +VR
Sbjct: 138 LLKSNVTESQSGEMLKESSLETLGYICQDIDPRVLETKANDVLTAIIHGMRPEESSANVR 197

Query: 71  LAATQALLNSLEFFRANFEKK 9
            AAT ALLNSLEF   NF  +
Sbjct: 198 FAATNALLNSLEFTNTNFSNE 218



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 43/80 (53%), Positives = 53/80 (66%)
 Frame = -2

Query: 484 RMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCV 305
           R AAGLQLKN L +K+   K  Y QRWL L  +VR  +K+N+   +GTE SRPS AAQCV
Sbjct: 60  RQAAGLQLKNVLCAKETETKNVYLQRWLQLTAEVREQVKQNVTGTLGTEPSRPSIAAQCV 119

Query: 304 AYVAVAELPVGQWNDLIQFL 245
           A +A AELP   W ++I  L
Sbjct: 120 AAIACAELPQNLWPNVINLL 139


>Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical
           protein R06A4.4a protein.
          Length = 883

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = -2

Query: 430 LKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAVAELPVGQWNDLIQ 251
           LK   + +W    +DV+ +++   L +IG +     +    +    V E  +  W DL+ 
Sbjct: 71  LKNNIRAKWNKYPQDVKFFVRTTCLKSIGDQEPLIRATVGIIVTTIVMEENMCDWPDLLD 130

Query: 250 FL*KMLFMSNLL 215
            L  +L   + L
Sbjct: 131 TLATVLMQPDEL 142


>Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical
           protein C02C6.1b protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 466 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 374
           QL NH+    PTL+   Q++  A+ +DV  Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 466 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 374
           QL NH+    PTL+   Q++  A+ +DV  Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 466 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 374
           QL NH+    PTL+   Q++  A+ +DV  Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316


>AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 466 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 374
           QL NH+    PTL+   Q++  A+ +DV  Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,804,533
Number of Sequences: 27780
Number of extensions: 245576
Number of successful extensions: 739
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)