Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1035
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 238 FSTRIGLDHSIVLLGAQLLPHTPHTVLLNLDDY 336
           F+T  G         ++LL H  H+ +L++ DY
Sbjct: 474 FATETGTSQMYAEKLSELLGHAFHSQVLSMSDY 506


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 443 RSEMIFQLQTSCHPSHLTVTTLRRTSDNILMNVVKF 550
           RS  +    T C P  + V+  R  +  I   +VKF
Sbjct: 261 RSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKF 296


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 578 LDTSTMLPPQISQHSSKCCPMS 513
           L+   M+PP I Q S    PM+
Sbjct: 575 LEVQVMVPPTIQQFSFTKLPMN 596


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 283 LPVGQWNDLIQFL*KML--FMSN 221
           L +G W+  +QFL  ML  F SN
Sbjct: 287 LLIGHWSGCLQFLVPMLQGFPSN 309


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 283 LPVGQWNDLIQFL*KML--FMSN 221
           L +G W+  +QFL  ML  F SN
Sbjct: 255 LLIGHWSGCLQFLVPMLQGFPSN 277


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 277 LGAQLLPHTPHTVLLNLDDY 336
           LG  +LPH P++  L   DY
Sbjct: 262 LGWDVLPHPPYSPDLAPSDY 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,109
Number of Sequences: 438
Number of extensions: 2938
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)