Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1031
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    86   4e-18
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.8  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   3.7  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   4.8  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   6.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   8.5  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 34/48 (70%), Positives = 41/48 (85%)
 Frame = -2

Query: 684 KHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEA 541
           K GFH+H+FGD TNGCTSAG HFNPE + HG  ++AVRHVGDLGN+E+
Sbjct: 43  KRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLES 90



 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 36/52 (69%), Positives = 39/52 (75%)
 Frame = -1

Query: 505 DSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 350
           DS ISL G NSIIGRT+V+HA  DDLG G  E S  TGNAG R ACGVIG+A
Sbjct: 102 DSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +2

Query: 320 TYEKCMYLNLGQANDSTSNTATGITSGLT*LMATE----SQVIRVSMDN*SATNDAVRSM 487
           T++K    N   + D+ S+  T  + G++ +   +    S  + ++ ++ S+TND +R +
Sbjct: 492 TFDKAQLSNTEDSYDNISH-GTSYSEGVSSIHMVKGERGSNNLELTSESLSSTNDTIRRL 550

Query: 488 KRDLGILIDTL 520
           +RDL  L + L
Sbjct: 551 QRDLLFLQNEL 561


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 371 LWSHWLGQDLNTYIFHMLGLVLQ 303
           +WS W+  +L T  FHM  + LQ
Sbjct: 424 MWSPWIIDNLGTVSFHMYVIYLQ 446


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 27  ITKQENKYTLRYINACTKDNVKPKIAILHNFRNAIKN 137
           +T +E  YT+  +   T+  ++ KI   H F  A+K+
Sbjct: 291 LTDEEKLYTIDRVRKSTRGGIENKIFKKHQFIEALKD 327


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 617 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 516
           STLK + +  PV L A+    ++LR L   ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
 Frame = +2

Query: 269  ISIQNIMKSLNIVVPSPTYEKCMYLNLGQANDSTSNTATGITSGLT*LMA------TESQ 430
            + ++N+  SLN+ +            L +  DS    +  + SGL  L A      TE++
Sbjct: 864  LDLKNLRSSLNVAISDNDQILTQLAELSKNYDSLEQESAQLNSGLKSLEAEKQLLHTENE 923

Query: 431  VIRVSMDN*SATNDAVRSMKRDLG 502
             + + +D  +       S   DLG
Sbjct: 924  ELHIRLDKLTGKLKIEESKSSDLG 947


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,351
Number of Sequences: 5004
Number of extensions: 63816
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)