Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1031
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 99 3e-21
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 98 6e-21
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 94 1e-19
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 93 3e-19
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 51 1e-06
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 39 0.004
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353... 31 1.3
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 29 3.8
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 5.1
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 99.1 bits (236), Expect = 3e-21
Identities = 44/51 (86%), Positives = 47/51 (92%)
Frame = -1
Query: 505 DSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 353
DSQI L GPNSIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 218 DSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
Score = 91.9 bits (218), Expect = 5e-19
Identities = 38/70 (54%), Positives = 46/70 (65%)
Frame = -2
Query: 717 VSGEVQGLTKGKHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 538
V+G V GL G HGFH+H GDTTNGC S G H+NP ++HG P RH GDLGN+ A
Sbjct: 148 VTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAG 207
Query: 537 EDSGVTKVSI 508
ED GV + +
Sbjct: 208 ED-GVANIHV 216
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 98.3 bits (234), Expect = 6e-21
Identities = 44/71 (61%), Positives = 48/71 (67%)
Frame = -2
Query: 717 VSGEVQGLTKGKHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 538
V G V GL G HGFH+H FGDTTNGC S G HFNP + HG PS RHVGDLGNI A
Sbjct: 40 VRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVAN 99
Query: 537 EDSGVTKVSIK 505
+D GV + IK
Sbjct: 100 KD-GVADIFIK 109
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = -1
Query: 508 QDSQISLHGPNSIIGRTLVVHADPDDLGLG 419
+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 109 KDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = -1
Query: 505 DSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 353
DSQI L G +SIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 100 DSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
Score = 91.5 bits (217), Expect = 6e-19
Identities = 41/70 (58%), Positives = 46/70 (65%)
Frame = -2
Query: 717 VSGEVQGLTKGKHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 538
V+G V GL G HGFHVH GDTTNGC S G HFNP ++HG P RH GDLGNI A
Sbjct: 30 VTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAG 89
Query: 537 EDSGVTKVSI 508
D GV V++
Sbjct: 90 AD-GVANVNV 98
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 92.7 bits (220), Expect = 3e-19
Identities = 42/70 (60%), Positives = 46/70 (65%)
Frame = -2
Query: 717 VSGEVQGLTKGKHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 538
V+ V GLT G HGFH+HEFGDTTNGC S G HFNP HG P VRH GDLGNI A
Sbjct: 80 VNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVA- 138
Query: 537 EDSGVTKVSI 508
GV + +I
Sbjct: 139 NAEGVAEATI 148
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/54 (66%), Positives = 42/54 (77%)
Frame = -1
Query: 505 DSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 344
D QI L GPNS++GR VVH DDLG GGHELS +TGNAGGR+ACGV+GL +
Sbjct: 150 DKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 50.8 bits (116), Expect = 1e-06
Identities = 31/87 (35%), Positives = 42/87 (48%)
Frame = -2
Query: 717 VSGEVQGLTKGKHGFHVHEFGDTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAI 538
V GL+ GKHG+ ++EFGD T G S G +NP P +GDLG +EA
Sbjct: 192 VEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEAG 245
Query: 537 EDSGVTKVSIKIPRSLFMDLTASLVAL 457
E G + S + +DL +AL
Sbjct: 246 E-KGEAQFSASKEKLKVVDLIGRSIAL 271
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/35 (51%), Positives = 18/35 (51%)
Frame = -2
Query: 729 STCCVSGEVQGLTKGKHGFHVHEFGDTTNGCTSAG 625
S V V GL HGFHVH G TTNGC G
Sbjct: 35 SLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>11_06_0295 +
22033367-22034947,22035030-22035137,22035230-22035370,
22035576-22035625,22036100-22036168,22036649-22036781,
22037634-22037747,22037826-22038038,22038387-22038500,
22038768-22038900,22039304-22039416,22040204-22040284,
22040397-22040483
Length = 978
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 603 QDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIKIPRSLFMDLTASLVA 460
+DH G + A+R VGDL + AI V ++ + R+ D +A L A
Sbjct: 36 RDHPGSAIALRLVGDLNHAAAIRVRKVIEIGGSLGRAAERDASAHLAA 83
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 654 DTTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIKIPRS 493
D TS GAH +P + H PSS + + + S T VS+K R+
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARA 62
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 484 GPNSIIGRTLVVHADPDDLGLGG 416
GP + +GR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,481,990
Number of Sequences: 37544
Number of extensions: 401465
Number of successful extensions: 985
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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